Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,028,528 – 1,028,618 |
Length | 90 |
Max. P | 0.915948 |
Location | 1,028,528 – 1,028,618 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -24.03 |
Consensus MFE | -22.43 |
Energy contribution | -22.77 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.39 |
Structure conservation index | 0.93 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915948 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1028528 90 - 22224390 UAAUGGGUCAUUUGAUAUAAUAAAGAUGUGAUUGCAAACUCCGAAGAAAGGAGGGGAAUAUAGCCAGGGGACGGUUAUGUCACUGUCCCA ...((((.((..(((((((((......((.(((.(...((((.......)))).).)))...))..(....).))))))))).)).)))) ( -24.90) >DroSec_CAF1 185 90 - 1 UGAUGGGGCAUUUGAUAUAAUAAAGAUGUGAUUGCAAACUCAGAAGAAAGGAGGGGAAUAUAGCCAGGGGACGGUUAUGUCACUGUCCCA ...(((((((..(.((((.......)))).).)))...)))).......(((.((..((((((((.(....)))))))))..)).))).. ( -23.60) >DroSim_CAF1 186 90 - 1 UGAUGGGGCAUUUGAUAUAAUAAAGAUGUGAUUGCAAACUCAGAAGAAAGGAGGGGAAUAUAGCCAGGGGACGGUUAUGUCACUGUCCCA ...(((((((..(.((((.......)))).).)))...)))).......(((.((..((((((((.(....)))))))))..)).))).. ( -23.60) >consensus UGAUGGGGCAUUUGAUAUAAUAAAGAUGUGAUUGCAAACUCAGAAGAAAGGAGGGGAAUAUAGCCAGGGGACGGUUAUGUCACUGUCCCA ...(((((((..(((((((((......((.(((.(...(((.........))).).)))...))..(....).))))))))).))))))) (-22.43 = -22.77 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:51 2006