Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,649,028 – 8,649,141 |
Length | 113 |
Max. P | 0.813222 |
Location | 8,649,028 – 8,649,141 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 90.33 |
Mean single sequence MFE | -20.67 |
Consensus MFE | -18.34 |
Energy contribution | -19.34 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.07 |
Structure conservation index | 0.89 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813222 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8649028 113 + 22224390 GGGGAGCUACAUACAUACAUAUAAACGAAAUAUUCCUCACCAACUAAUCACAAAAUACAAAACUAGAGGGGAGCCUUCAUUUCUGAACUUUUUGCUCCCUUUUUACUAUUUUU (((((((............................(((.((..(((.................)))..)))))..((((....))))......)))))))............. ( -17.83) >DroSec_CAF1 86186 105 + 1 GGGGAGCAAC--------AUAUAAAAUAAAUAUUCCUCACCAACUAAUCACAAAAUACAAAACUAGAGGGGAGCCUUCAUUUCUGAACUUUUUGCUCCCUUUUGCCUAGUUUU ((((((....--------..............))))))....................((((((((((((((((.((((....))))......))))))))....)))))))) ( -22.57) >DroSim_CAF1 49790 105 + 1 GGGGUGCAAC--------AUAUAAACGAAAUAUUCCUCACCAACUAAUCACAAAAUACAAAACUAGAGGGGAGCCUUCAUUUCUGAACUUUUUGCUCCCUUUUUCCUAGUUUC ..((((....--------((((.......))))....))))..................(((((((((((((((.((((....))))......))))))))....))))))). ( -21.60) >consensus GGGGAGCAAC________AUAUAAACGAAAUAUUCCUCACCAACUAAUCACAAAAUACAAAACUAGAGGGGAGCCUUCAUUUCUGAACUUUUUGCUCCCUUUUUCCUAGUUUU ((((((..........................))))))....................((((((((((((((((.((((....))))......))))))))....)))))))) (-18.34 = -19.34 + 1.00)
Location | 8,649,028 – 8,649,141 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 90.33 |
Mean single sequence MFE | -27.33 |
Consensus MFE | -24.13 |
Energy contribution | -24.80 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.88 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8649028 113 - 22224390 AAAAAUAGUAAAAAGGGAGCAAAAAGUUCAGAAAUGAAGGCUCCCCUCUAGUUUUGUAUUUUGUGAUUAGUUGGUGAGGAAUAUUUCGUUUAUAUGUAUGUAUGUAGCUCCCC ..............((((((..........((((((....(((((..((((((...........))))))..)).)))...))))))...((((((....)))))))))))). ( -26.70) >DroSec_CAF1 86186 105 - 1 AAAACUAGGCAAAAGGGAGCAAAAAGUUCAGAAAUGAAGGCUCCCCUCUAGUUUUGUAUUUUGUGAUUAGUUGGUGAGGAAUAUUUAUUUUAUAU--------GUUGCUCCCC (((((((((.....((((((......((((....)))).)))))).))))))))).................((.(((.(((((.........))--------))).))))). ( -28.40) >DroSim_CAF1 49790 105 - 1 GAAACUAGGAAAAAGGGAGCAAAAAGUUCAGAAAUGAAGGCUCCCCUCUAGUUUUGUAUUUUGUGAUUAGUUGGUGAGGAAUAUUUCGUUUAUAU--------GUUGCACCCC (((((((((.....((((((......((((....)))).)))))).))))))))).................((((....((((.......))))--------....)))).. ( -26.90) >consensus AAAACUAGGAAAAAGGGAGCAAAAAGUUCAGAAAUGAAGGCUCCCCUCUAGUUUUGUAUUUUGUGAUUAGUUGGUGAGGAAUAUUUCGUUUAUAU________GUUGCUCCCC ..............((((((((....((((....))))..(((((..((((((...........))))))..)).)))..........................)))))))). (-24.13 = -24.80 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:05 2006