Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,634,655 – 8,634,756 |
Length | 101 |
Max. P | 0.815398 |
Location | 8,634,655 – 8,634,756 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 69.59 |
Mean single sequence MFE | -21.37 |
Consensus MFE | -11.14 |
Energy contribution | -12.57 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.29 |
Mean z-score | -1.79 |
Structure conservation index | 0.52 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8634655 101 - 22224390 AGAUCGUUAAGUACGUAAAUACUUAAUACGCUAUUGAAAAGGGCUAAUGAGCUUGGACCAAUGGAAA--CACA-----CAAGCUGAUG-GAAAGUGGUCAAAGUGGGAA ...((((((((((......)))))))).((((.((((.........((.((((((......((....--))..-----)))))).)).-........)))))))).)). ( -23.47) >DroSec_CAF1 72113 83 - 1 AGAUCAUUAAGUACGUAAGUACUUAAUACGCUAGUGAAAA----------------GCCAAUGGAAA--CUCA-----GA--GUGAUG-GGAAGUGGUCAAAGAGGGAA .(((((((((((((....))))))))).((((..(((...----------------.((...))...--.)))-----.)--)))...-......)))).......... ( -20.90) >DroSim_CAF1 35733 99 - 1 AGAUCGUUUAGUACGUAGAUACAUAAUACGCUAGUGAAAAGGGUUAAUGAGCUUGGGCCAAUGGAAA--CACA-----GA--GUGAUG-GAAAGUGGUCAAAGGGGGAA .((((.((((.((((((.........)))).)).))))...))))......(((.(((((.((....--))((-----..--....))-.....))))).)))...... ( -16.80) >DroEre_CAF1 84298 108 - 1 AGAUCCUGACUCUUUAAAGUCAUUUAGACG-UAUUGAAAAGGGCUCAUGAGCUUGGGAAAAUAAGGAAGGACAGCAUGCAAGCUGGUGGGAAAGUGGUCAAAGUGGGAA ...((((((((......)))))......((-..((((......(((((.((((((.......................)))))).))))).......))))..))))). ( -24.32) >consensus AGAUCGUUAAGUACGUAAAUACUUAAUACGCUAGUGAAAAGGGCUAAUGAGCUUGGGCCAAUGGAAA__CACA_____CA__CUGAUG_GAAAGUGGUCAAAGUGGGAA .(((((((((((((....)))))))))...((((((....(((((....)))))....))))))...............................)))).......... (-11.14 = -12.57 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:59 2006