Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,604,444 – 8,604,537 |
Length | 93 |
Max. P | 0.515706 |
Location | 8,604,444 – 8,604,537 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 76.61 |
Mean single sequence MFE | -27.08 |
Consensus MFE | -14.62 |
Energy contribution | -16.32 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.05 |
Mean z-score | -1.61 |
Structure conservation index | 0.54 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515706 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8604444 93 + 22224390 GGUGGCUG--GCUGUGGCCUUU---UUUGCAUUGAUGCUACCGCCGCACCGGGCGGCCGUCGCAAAAUUAGCC-CCAUUCCCCACACCAC----UCGACCACA ((((...(--(.((.(((...(---(((((...((((...(((((......))))).))))))))))...)))-.))..))...))))..----......... ( -31.10) >DroSec_CAF1 42622 82 + 1 GGUGGC-------------UUU---UUUGCAUUGAUGCUACCGCCGCACCGGGCGGCCGUCGCAAAAUUAGCC-CCAUUCCCCACACCAC----UCCACCACA ((.(((-------------(.(---(((((...((((...(((((......))))).))))))))))..))))-))..............----......... ( -26.70) >DroEre_CAF1 53475 84 + 1 GGUGGCUGUGGCU--------U---UUUGCAUUGAUGCUACCGCCGCACCGGGCGGCCGUCGCAAAAUUAGCC-CCAUUCCCCACUCCAC----UC---CACU (((((.((.((((--------(---(((((...((((...(((((......))))).))))))))))..))))-.))....)))))....----..---.... ( -28.00) >DroYak_CAF1 42622 91 + 1 GGUGGCUGCGGCUGUGGC-UCU---UGCGCAUUGAUGCUACCGCCGCACCGGGCGGCCGUCGCAAAAUUAGCC-CCAUUCCCCACUCCAC----UA---CACA (((((.((((((.(((((-((.---........)).))))).))))))..((((.((....)).......)))-)...........))))----).---.... ( -31.80) >DroAna_CAF1 36270 83 + 1 --------------UGGC-AUU---UUUGCAUUGAUGCUACCGCCACACCGGGCGGCCGUCGCAAAAUUAGCC-CCAUUCCCCAUCCCCCCAUCUCCA-CAGA --------------.(((-..(---(((((...((((...(((((......))))).))))))))))...)))-........................-.... ( -21.10) >DroPer_CAF1 56062 94 + 1 UUUGGCUUUGGCUUUGCC-UUUGCGUUUGCAUUGAUGCUACCGCCGCACCGGGCGGCCGUUGCAAAAUUAGCCCCCAUUCCCCAUUCCACCAGCA-------- ..(((....((((....(-..(((....)))..).(((.((.(((((.....))))).)).))).....)))).)))..................-------- ( -23.80) >consensus GGUGGCUG__GCU_UGGC_UUU___UUUGCAUUGAUGCUACCGCCGCACCGGGCGGCCGUCGCAAAAUUAGCC_CCAUUCCCCACUCCAC____UC___CACA ((.((((..................(((((...((((...(((((......))))).)))))))))...)))).))........................... (-14.62 = -16.32 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:51 2006