Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,023,103 – 1,023,195 |
Length | 92 |
Max. P | 0.531600 |
Location | 1,023,103 – 1,023,195 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 89.46 |
Mean single sequence MFE | -27.46 |
Consensus MFE | -21.28 |
Energy contribution | -21.60 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.14 |
Mean z-score | -1.45 |
Structure conservation index | 0.77 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531600 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1023103 92 + 22224390 UUUUAACCAAAACAUUAAGCAGCUGGUGUCACAUUAUAUCAGCGAGGCGGAGGCGAGGCUUAGUUAGCCUGGGAGCAGCAGCCGCAGCAACA ..................((.((((((((......))))))))...((((..((.(((((.....)))))(....).))..)))).)).... ( -29.90) >DroSec_CAF1 8622 92 + 1 UUUUAACCAAAACAUUAAGCAGCUGGUGUCACAUUAUAUCAGAGAGGCGGAGGCGAGGCUUAGUUAGCCUGGGAGCAGCAGCCGCAGCAACA ..................((..(((((((......)))))))....((((..((.(((((.....)))))(....).))..)))).)).... ( -25.90) >DroSim_CAF1 8180 92 + 1 UUUUAACCAAAACAUUAAGCAGCUGGUGUCACAUUAUAUCAGCGAGGCGGAGGCGAGGCUUAGUUAGCCUGGGAGCAGCAGCCACAGCAACA ..................((.((((((((......))))))))..(((.(..((.(((((.....)))))....))..).)))...)).... ( -27.50) >DroYak_CAF1 8898 92 + 1 UUUUAACCAAAACAUUAAGCAGCUGGUGUCACAUUAUAUCAGCGAGGCGGAGGCGAGGCUUAGUUGGCCUGGGAGCAGCAGCCGCAGCAACA ..................((.((((((((......))))))))...((((..((.(((((.....)))))(....).))..)))).)).... ( -29.90) >DroAna_CAF1 13331 86 + 1 UUUUAACCAAAACAUUAAGCAGCUGGUGUCACAUUAUAUCAGCGGCAAGGAGGCAGGUCUUAGUUGGCCCUGU------UGGGUCUGCAACA ..................((.((((((((......)))))))).))...((((....)))).((.(((((...------.))))).)).... ( -24.10) >consensus UUUUAACCAAAACAUUAAGCAGCUGGUGUCACAUUAUAUCAGCGAGGCGGAGGCGAGGCUUAGUUAGCCUGGGAGCAGCAGCCGCAGCAACA ..................((.((((((((......))))))))(.(((....((.(((((.....)))))....))....))).).)).... (-21.28 = -21.60 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:45 2006