Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 128,113 – 128,203 |
Length | 90 |
Max. P | 0.857529 |
Location | 128,113 – 128,203 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 79.91 |
Mean single sequence MFE | -31.69 |
Consensus MFE | -21.28 |
Energy contribution | -22.62 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.32 |
Mean z-score | -1.91 |
Structure conservation index | 0.67 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857529 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 128113 90 + 22224390 -------------UGGCCAUCCUCCGUUGUAAUAUAUAUUUGCCCAUCCUGUGUCUCGGUGAGAUCUACGGUCAUGUUCUCAUGACCAUUUACAUCAGUGAGA -------------(((.((.....................)).))).......(((((.(((.......(((((((....))))))).......))).))))) ( -20.54) >DroVir_CAF1 5703 103 + 1 UUUGCACUUACCUUGCCCAUCCUCGGUGGUGAUAAAGAUUUGACCAUCCUGCGCCUCGGUUAGAUCCACGGUCAUAUUCUCAUGGCCAUUCACAUCGGCAAGG ..........((((((((((.....)))((((....(((((((((............)))))))))...((((((......))))))..))))...))))))) ( -33.80) >DroGri_CAF1 7391 101 + 1 --CGCAUUUACCUUGGCCAUCCUCGGUGGUGAUAAAGAUUUGACCAUCCUGCGCCUCGGUUAGAUCCACGGUCAUGUUCUCAUGACCAUUCACAUCGGUUAAG --.........(((((((..(....)..((((....(((((((((............)))))))))...(((((((....)))))))..))))...))))))) ( -30.20) >DroMoj_CAF1 6622 103 + 1 GUGGCACUUACCCUGCCCAUCCUCGGUGGUAAUAAAGAUUUGGCCAUCCUGCGCCUCGGUCAGAUCGACGGUCAUAUUGUCAUGACCAUUCACAUCGGCGAGA (.((((.......)))))...((((.((((......(((((((((............)))))))))...((((((......))))))......)))).)))). ( -33.30) >DroAna_CAF1 22196 101 + 1 --GAUGCUCACCCUGACCAUCCUCGGUGGUGAUGAAUAUUUGGCCAUCUUGCGUCUCGGUGAGGUCCACGGUCAUGUUCUCGUGGCCAUUGACGUCGGUGAGA --....((((((..(((.....((((((((.((((..((.(((((((((..(......)..))))....))))).))..)))).)))))))).))))))))). ( -38.00) >DroPer_CAF1 611 101 + 1 --ACUACUCACCCUGCCCAUCCUCGGUGGUGAUAUAGAUUUGGCCAUCUUGCGUCUCGGUCAGAUCCACGGUCAUGUUCUCAUGCCCGUUGACAUCGGUGAGA --....((((((..(((.......)))((((.....(((((((((............))))))))).((((.((((....)))).))))...)))))))))). ( -34.30) >consensus __GGCACUUACCCUGCCCAUCCUCGGUGGUGAUAAAGAUUUGGCCAUCCUGCGCCUCGGUCAGAUCCACGGUCAUGUUCUCAUGACCAUUCACAUCGGUGAGA .....................((((.(((((.....(((((((((............)))))))))...(((((((....))))))).....))))).)))). (-21.28 = -22.62 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:51 2006