Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,468,922 – 8,469,033 |
Length | 111 |
Max. P | 0.989834 |
Location | 8,468,922 – 8,469,033 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 67.24 |
Mean single sequence MFE | -21.27 |
Consensus MFE | -10.99 |
Energy contribution | -11.00 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.19 |
Mean z-score | -2.18 |
Structure conservation index | 0.52 |
SVM decision value | 2.18 |
SVM RNA-class probability | 0.989834 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8468922 111 + 22224390 CUACAUCGGUGCAAGACCUGAUGAGCACCCCCUAUAUGGUGCCCCCUGUUUCACUCCCCCUAUUUCACUACCCUU---------UACGUAUCCUUGCACUAUCCAUAGAUUUUCUUGGGU .......((((((((.........(((((........)))))..........................(((....---------...)))..))))))))(((((.((.....))))))) ( -21.80) >DroSec_CAF1 11693 120 + 1 CUACAUCGGUGCAAGACCCGAUGAGCACCCCCUAUAUGGUGCCCCCUGUUUCACUAACCCUAUUUCACUCCCCCUAUUUCAAACUACGUAUCCUUGCACUGUCCAUAGAUUUUCUUGCGU (((...((((((((((..((....(((((........))))).....(((.....)))............................))..).)))))))))....)))............ ( -21.80) >DroYak_CAF1 18351 85 + 1 CUACAUCGGUGCCAGACUUUAGGAGCACCCCCUAUAUAGUAG------------------------GUACCCCC----------UAUGCCUCCUUGCACUAUUCGUAGAUUUUCUU-UUU ((((...((((((..(((.((((.......))))...))).)------------------------)))))...----------..(((......)))......))))........-... ( -20.20) >consensus CUACAUCGGUGCAAGACCUGAUGAGCACCCCCUAUAUGGUGCCCCCUGUUUCACU__CCCUAUUUCACUCCCCCU_________UACGUAUCCUUGCACUAUCCAUAGAUUUUCUUGCGU .......(((((............)))))..(((((((((((.....................................................)))))))..))))............ (-10.99 = -11.00 + 0.01)
Location | 8,468,922 – 8,469,033 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 67.24 |
Mean single sequence MFE | -27.17 |
Consensus MFE | -15.98 |
Energy contribution | -16.73 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.14 |
Mean z-score | -1.53 |
Structure conservation index | 0.59 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928380 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8468922 111 - 22224390 ACCCAAGAAAAUCUAUGGAUAGUGCAAGGAUACGUA---------AAGGGUAGUGAAAUAGGGGGAGUGAAACAGGGGGCACCAUAUAGGGGGUGCUCAUCAGGUCUUGCACCGAUGUAG ..(((((.....)).)))...((((((((.(((...---------....)))........................(((((((........)))))))......))))))))........ ( -25.60) >DroSec_CAF1 11693 120 - 1 ACGCAAGAAAAUCUAUGGACAGUGCAAGGAUACGUAGUUUGAAAUAGGGGGAGUGAAAUAGGGUUAGUGAAACAGGGGGCACCAUAUAGGGGGUGCUCAUCGGGUCUUGCACCGAUGUAG .(....).....(((((..(.((((((((...((............................(((.....)))...(((((((........)))))))..))..)))))))).).))))) ( -27.40) >DroYak_CAF1 18351 85 - 1 AAA-AAGAAAAUCUACGAAUAGUGCAAGGAGGCAUA----------GGGGGUAC------------------------CUACUAUAUAGGGGGUGCUCCUAAAGUCUGGCACCGAUGUAG ...-........(((((....((((....((((...----------((((((((------------------------(..((....))..)))))))))...)))).))))...))))) ( -28.50) >consensus ACACAAGAAAAUCUAUGGAUAGUGCAAGGAUACGUA_________AGGGGGAGUGAAAUAGGG__AGUGAAACAGGGGGCACCAUAUAGGGGGUGCUCAUCAGGUCUUGCACCGAUGUAG ............(((((....((((((((.....................................(.....)...(((((((........)))))))......))))))))...))))) (-15.98 = -16.73 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:36 2006