Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,009,228 – 1,009,321 |
Length | 93 |
Max. P | 0.997635 |
Location | 1,009,228 – 1,009,321 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 96.86 |
Mean single sequence MFE | -22.33 |
Consensus MFE | -20.69 |
Energy contribution | -20.92 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -2.10 |
Structure conservation index | 0.93 |
SVM decision value | 2.90 |
SVM RNA-class probability | 0.997635 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1009228 93 + 22224390 -CGCUUCCUUGUUCGCGCAAAUAAAAUGCAAACAAUGUUUGUUUCAUUUGCGUAAUAAAAUAUUUAUACAGGUAUUUAGUUGGCCACGAAGCAG -.(((((..((..(((((((((.....((((((...))))))...))))))))(((.((((((((....)))))))).))))..)).))))).. ( -23.60) >DroSec_CAF1 94705 93 + 1 -CGCUUCCUUGUUCGCGCAAAUAAAAUGCAAACAAUGUUUGUUUCAUUUGCGUAAUAAAAUAUUUAUACAGGUAUUUAGUUGGCCACGAAGCAG -.(((((..((..(((((((((.....((((((...))))))...))))))))(((.((((((((....)))))))).))))..)).))))).. ( -23.60) >DroSim_CAF1 71905 93 + 1 -CGCUUCCUUGUUCGCGCAAAUAAAAUGCAAACAAUGUUUGUUUCAUUUGCGUAAUAAAAUAUUUAUACAGGUAUUUAGUUGGCCACGAAGCAG -.(((((..((..(((((((((.....((((((...))))))...))))))))(((.((((((((....)))))))).))))..)).))))).. ( -23.60) >DroEre_CAF1 105992 93 + 1 -CGCUUCCUUGUUCGCGCAAAUAAAAUGCAAACAUUGUUUGUUUCAUUUGCGUAAUAAAAUAUUUAUACAGGUAUUUAGUUGGCCACGAAGCAG -.(((((..((..(((((((((.....((((((...))))))...))))))))(((.((((((((....)))))))).))))..)).))))).. ( -23.60) >DroYak_CAF1 97495 93 + 1 -CGCUUCCUUGUUCGCGCAAAUAAAAUGCAAACAGUGUUUGUUUCAUUUGCGUAAUAAAAUAUUUAUACAGGUAUUUAGUUGGCCACGAAGCAG -.(((((..((..(((((((((.....((((((...))))))...))))))))(((.((((((((....)))))))).))))..)).))))).. ( -23.60) >DroAna_CAF1 97091 94 + 1 ACAUUUCCUUGUUCGCGCAAAUAAAAUGCAAACAAUGCUUGUUUCAUUUGCGUAAUAAAAUAUUUAUACAGGUAUUUAGUUGGCCGCAAAGCAC ........((((..((((((((.(((((((.....)))..)))).)))))).((((.((((((((....)))))))).)))))).))))..... ( -16.00) >consensus _CGCUUCCUUGUUCGCGCAAAUAAAAUGCAAACAAUGUUUGUUUCAUUUGCGUAAUAAAAUAUUUAUACAGGUAUUUAGUUGGCCACGAAGCAG ..(((((..((..(((((((((.....((((((...))))))...))))))))(((.((((((((....)))))))).))))..)).))))).. (-20.69 = -20.92 + 0.22)
Location | 1,009,228 – 1,009,321 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 96.86 |
Mean single sequence MFE | -20.27 |
Consensus MFE | -18.90 |
Energy contribution | -18.65 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.12 |
Mean z-score | -1.69 |
Structure conservation index | 0.93 |
SVM decision value | 2.16 |
SVM RNA-class probability | 0.989336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1009228 93 - 22224390 CUGCUUCGUGGCCAACUAAAUACCUGUAUAAAUAUUUUAUUACGCAAAUGAAACAAACAUUGUUUGCAUUUUAUUUGCGCGAACAAGGAAGCG- ..(((((.((..(......(((....))).............((((((((((((((((...)))))..))))))))))).)..))..))))).- ( -20.90) >DroSec_CAF1 94705 93 - 1 CUGCUUCGUGGCCAACUAAAUACCUGUAUAAAUAUUUUAUUACGCAAAUGAAACAAACAUUGUUUGCAUUUUAUUUGCGCGAACAAGGAAGCG- ..(((((.((..(......(((....))).............((((((((((((((((...)))))..))))))))))).)..))..))))).- ( -20.90) >DroSim_CAF1 71905 93 - 1 CUGCUUCGUGGCCAACUAAAUACCUGUAUAAAUAUUUUAUUACGCAAAUGAAACAAACAUUGUUUGCAUUUUAUUUGCGCGAACAAGGAAGCG- ..(((((.((..(......(((....))).............((((((((((((((((...)))))..))))))))))).)..))..))))).- ( -20.90) >DroEre_CAF1 105992 93 - 1 CUGCUUCGUGGCCAACUAAAUACCUGUAUAAAUAUUUUAUUACGCAAAUGAAACAAACAAUGUUUGCAUUUUAUUUGCGCGAACAAGGAAGCG- ..(((((.((..(......(((....))).............((((((((((((((((...)))))..))))))))))).)..))..))))).- ( -20.90) >DroYak_CAF1 97495 93 - 1 CUGCUUCGUGGCCAACUAAAUACCUGUAUAAAUAUUUUAUUACGCAAAUGAAACAAACACUGUUUGCAUUUUAUUUGCGCGAACAAGGAAGCG- ..(((((.((..(......(((....))).............((((((((((((((((...)))))..))))))))))).)..))..))))).- ( -20.90) >DroAna_CAF1 97091 94 - 1 GUGCUUUGCGGCCAACUAAAUACCUGUAUAAAUAUUUUAUUACGCAAAUGAAACAAGCAUUGUUUGCAUUUUAUUUGCGCGAACAAGGAAAUGU .((.(((((................(((............)))((((((((((...(((.....))).)))))))))))))))))......... ( -17.10) >consensus CUGCUUCGUGGCCAACUAAAUACCUGUAUAAAUAUUUUAUUACGCAAAUGAAACAAACAUUGUUUGCAUUUUAUUUGCGCGAACAAGGAAGCG_ ..(((((..((...........))...............(..((((((((((((((((...)))))..)))))))))))..).....))))).. (-18.90 = -18.65 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:36 2006