Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,454,918 – 8,455,011 |
Length | 93 |
Max. P | 0.807260 |
Location | 8,454,918 – 8,455,011 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 86.19 |
Mean single sequence MFE | -27.50 |
Consensus MFE | -20.80 |
Energy contribution | -20.84 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.19 |
Mean z-score | -1.92 |
Structure conservation index | 0.76 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807260 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8454918 93 + 22224390 CAGCGGACACGCAUUAAAAUUGUAGCAGUCCGAAAGGAAAGACAUUGACAGCGGUCCAUGGGCGGGGGCGGUGGUCGAAAAAGGGCAUAAAAG ..(((....))).......((((.((..(((....)))......(((((.((.((((........)))).)).)))))......))))))... ( -26.80) >DroSec_CAF1 143 93 + 1 CAGCGGACACGCAUUAAAAUUGUAGCAGUCCGAAAGGAAAGACAUUGACAGUGGUCCAUGGGCGGGGGCGUUGGUCCAAAAAGGGCGAAAAAG (((((..(.(((................(((....)))....(((.(((....))).))).))).)..)))))((((.....))))....... ( -27.30) >DroSim_CAF1 7637 93 + 1 CAGCGGACACGCAUUAAAAUUGUAGCAGUCCGAAAGGAAAGACAUUGACAGUGGUCCAUGGGCGGGGGCGUUGGUCCAAAAAGGGCAAAAAAG (((((..(.(((................(((....)))....(((.(((....))).))).))).)..)))))((((.....))))....... ( -27.30) >DroEre_CAF1 5491 90 + 1 CAGCGGACACGCAUUAAAAUUGUAGCAGUCCGAAUGGAAAGGCAGGGACAGCGGUCCAUGGGCGGGGGCGGUGGUCCGGAAGGCGCA---AAG ..(((....))).......((((.((..((((..(....)..)..((((.((.((((........)))).)).)))))))..)))))---).. ( -30.20) >DroYak_CAF1 4786 81 + 1 CUGUGGACACGCAUUAAAAGUGUAGCAGUUCGAAAGGAAAGGCAGUGACAGCGGUCCAGGGGCGGGGGCGGUGGUCC---------A---AAG ((.(((((.(((......(.(((.....(((....)))...))).)....)))))))).))....((((....))))---------.---... ( -25.90) >consensus CAGCGGACACGCAUUAAAAUUGUAGCAGUCCGAAAGGAAAGACAUUGACAGCGGUCCAUGGGCGGGGGCGGUGGUCCAAAAAGGGCA_AAAAG ..((((((.(((........(((.....(((....)))...)))......))))))).(((((.(......).)))))......))....... (-20.80 = -20.84 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:17 2006