Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,310,272 – 8,310,385 |
Length | 113 |
Max. P | 0.820901 |
Location | 8,310,272 – 8,310,385 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.98 |
Mean single sequence MFE | -33.30 |
Consensus MFE | -25.52 |
Energy contribution | -25.63 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.62 |
Structure conservation index | 0.77 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820901 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8310272 113 - 22224390 AU-------CUCCAUCUCCGCUGGUCCCACAUUCCGGGCUCCAAUGGCCAACAGACGCCAUUUUCGACCGCCCAUCUCACUCCCUCUUGUGGCGGAGGUGGUGGCCGCCGCUACACUGAG ..-------((((((((((((..............((((((.((((((........))))))...))..))))....(((........))))))))))))(((((....)))))...))) ( -39.20) >DroSec_CAF1 3460 100 - 1 AUCUCUGAUCUCCAUCUCCGCUGGGCCCACAUUCCGGGCUCUAAUGGCCAACAGACGUCAUUUU-----------------CCCUCUUGUGGU---GGUGGUGACCCACGCUACACUGAG ........((.(((((.((((.((((((.......)))))).((((((........))))))..-----------------.......)))).---))))).))................ ( -29.00) >DroSim_CAF1 3486 93 - 1 AU-------CUCCAUCUCCGCUGGGCCCACAUUCCGGGCUCUAAUGGCCAACAGACGCCAUUUU-----------------CCCCCUUGUGGU---GGUGGUGACCCACGCUACACUGAG .(-------(.(((((.((((.((((((.......)))))).((((((........))))))..-----------------.......)))).---))))).))................ ( -31.70) >consensus AU_______CUCCAUCUCCGCUGGGCCCACAUUCCGGGCUCUAAUGGCCAACAGACGCCAUUUU_________________CCCUCUUGUGGU___GGUGGUGACCCACGCUACACUGAG .........(((.....((((.((((((.......)))))).((((((........))))))..........................)))).....((((((.....))))))...))) (-25.52 = -25.63 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:20 2006