Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,278,386 – 8,278,503 |
Length | 117 |
Max. P | 0.531960 |
Location | 8,278,386 – 8,278,503 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.11 |
Mean single sequence MFE | -34.85 |
Consensus MFE | -20.96 |
Energy contribution | -20.77 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.32 |
Mean z-score | -1.63 |
Structure conservation index | 0.60 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531960 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8278386 117 - 22224390 ACCAUUCCCGGAUCUGCGGUGCAACCAGUUGGUUGUCUAC---CACUUGUACUACAUCGCCCUGAACACCGCCAUCUCAGUGGUGUUCUUCCUGGUCCAUUCCAUUCAGGAGCUGCUGCU .........(((((.((((((....(((.((((.....))---)).))).....))))))...(((((((((.......))))))))).....)))))..(((.....)))((....)). ( -36.30) >DroSec_CAF1 4740 117 - 1 ACCAUUCACGGAUCUGCGGUGCAACCAGUUGGUUGUCUAC---CACUUGUACUACAUCGCCAUCGCCACCGCCAUCUCAGUGGUGUUCUACCUGGUCCAUUCCAUCCAGGAGCUGCUCCU .........(((.(.(((((((((((....))))))..))---)......................((((((.......)))))).....(((((..........))))).)).).))). ( -31.80) >DroAna_CAF1 27589 108 - 1 GCCGUUCGUGGACGCCUGGUGCAAUGACUUCA---UCUACGUGUACAUGUACUUCAUUGCCCUGACCACCGGAGUGGCGGUGGCCUUCUUCCUGAGCCACUCCUGCCAC---------CA .(((...((((...(..((.(((((((...((---(.((....)).)))....))))))))).).))))))).((((((((((((........).))))))...)))))---------.. ( -36.60) >DroSim_CAF1 15832 117 - 1 ACCAUUCACGGAUGUGCGGUGCAACCAGUUGGUUGUCUAC---CACUUGUACUACAUCGCAAUCGCCACCGGCAUCUCAGUGGUGUUCUACCUGGCCCAUUCCAUCCAGGAGCUGCUCCU .........((((((((((((....(((.((((.....))---)).))).....)))))))...((((..((((((.....)))))).....))))......)))))(((((...))))) ( -34.70) >consensus ACCAUUCACGGAUCUGCGGUGCAACCAGUUGGUUGUCUAC___CACUUGUACUACAUCGCCAUCACCACCGCCAUCUCAGUGGUGUUCUACCUGGUCCAUUCCAUCCAGGAGCUGCUCCU ((((((...((((..(((((((((((....)))))............((.....))..........)))))).)))).))))))......(((((..........))))).......... (-20.96 = -20.77 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:01 2006