Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,272,897 – 8,272,994 |
Length | 97 |
Max. P | 0.742657 |
Location | 8,272,897 – 8,272,994 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.49 |
Mean single sequence MFE | -34.12 |
Consensus MFE | -17.74 |
Energy contribution | -17.06 |
Covariance contribution | -0.68 |
Combinations/Pair | 1.24 |
Mean z-score | -1.73 |
Structure conservation index | 0.52 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742657 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8272897 97 - 22224390 CAGCGCAAUUUCGCGCAGCUUCAGGUGACAGCCGACGCUAAACGAGCAGACCACAUUGUUUAUCACAAUGUCCAGCUCGUGCUCAUUAUCAG--CA----AUU----------------- ..((((......))))(((.((.(((....))))).)))..((((((.....(((((((.....)))))))...))))))(((.......))--).----...----------------- ( -29.60) >DroAna_CAF1 19966 113 - 1 CAGGGCGAUGUCCCGCAGCUUCAGGUGGCAUCGGACACUAAAGGAGCACACCACAUUGUUGAUGACGAUGUCCAGUUCGGGUUCUUCAGUGCCGGU----AGUC---UCAGUGGUUGCGG ..((((...))))(((((((....(.((((((((.((((.(((((.(..((.((((((((...))))))))...))...).))))).)))))))))----.)))---.)...))))))). ( -40.30) >DroSim_CAF1 12119 97 - 1 CAGCGCAAUAUCGCGCAGCUUCAGGUGGCAGCCGACGCUAAACGAGCAUACCACAUUGUUUAUCACAAUGUCCAGCUCGGGCUCAUUAUCAG--CC----AUU----------------- ..((((......))))(((.((.(((....))))).)))...(((((.....(((((((.....)))))))...)))))((((.......))--))----...----------------- ( -32.00) >DroWil_CAF1 16756 116 - 1 CAGGGCAAUCUCCCGCAACUUGAGAUGACAUCGCACACUAAACGAGCAGACAACAUUAUUGAUAACAAUGUCAAGUUCGGGCUCAACUUCAGUUUCUUCGAUUGCUU---UUGCGCCCG- ..((((((((.((((.(((((((..((...(((.........))).))........(((((....))))))))))))))))...(((....))).....))))((..---..)))))).- ( -28.20) >DroYak_CAF1 10327 115 - 1 CAGCGCAAUAUCGCGCAGCUUCAGGUGGCAGCCAACGCUAAACGAGCAGACCACAUUGUUGAUCACAAUGUCCAGCUCGGGCUCAUCAUCGGAGGC----AUUGCCAUCAUUGGCCGCG- ..((((......)))).(((((.(((((.((((.........(((((.....(((((((.....)))))))...)))))))))..))))).)))))----...((((....))))....- ( -40.50) >consensus CAGCGCAAUAUCGCGCAGCUUCAGGUGGCAGCCGACGCUAAACGAGCAGACCACAUUGUUGAUCACAAUGUCCAGCUCGGGCUCAUCAUCAG__CC____AUU________UG____CG_ ..(((......)))((.......((((........))))...(((((.....(((((((.....)))))))...))))).))...................................... (-17.74 = -17.06 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:58 2006