Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,261,675 – 8,261,788 |
Length | 113 |
Max. P | 0.547826 |
Location | 8,261,675 – 8,261,788 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 95.21 |
Mean single sequence MFE | -33.47 |
Consensus MFE | -26.83 |
Energy contribution | -26.17 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.09 |
Mean z-score | -2.31 |
Structure conservation index | 0.80 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8261675 113 + 22224390 UGUCUGCUUCUUUGCUUUCUUCUUCUUGGCGUCUCUUCUUCGCUUUUGUGCAAAGGAGGAGCGUUUAAAAGAAAAGGGGAGAAGGUUAGGCACUUGGCAAAAAAGAAUAUACC (((((((((....((((((((((((((.((((..((((((.((......)).))))))..))))....))))....)))))))))).)))))...)))).............. ( -34.90) >DroSec_CAF1 11983 108 + 1 UGUCUGCUUCUUCGCUUUCUUCUUCUUGGCGUCUCUUCU--GCUUUUGUGCAAAG---GAGCGUUUAAAAGAAAAGGGGAGAAGGUUAGACACUUGGCAAAAAAGAAUAUACC (((((((((((((.((((..((((...((((.(((((.(--((......))).))---)))))))...)))))))).)))))))..))))))(((.......)))........ ( -34.00) >DroYak_CAF1 15904 108 + 1 UGUCUGCUUCUUCGCUUUCUUCUUCUUGGCGUCUCUUCU--GCUUUUGUGCAAAG---GAGUGUUUAAAAGAAAAGGGGAGAAGGUUAGGCACUUGGCAAAAAAGAAUAUACC (((((((((((((.((((..((((...((((.(((((.(--((......))).))---)))))))...)))))))).)))))))..))))))(((.......)))........ ( -31.50) >consensus UGUCUGCUUCUUCGCUUUCUUCUUCUUGGCGUCUCUUCU__GCUUUUGUGCAAAG___GAGCGUUUAAAAGAAAAGGGGAGAAGGUUAGGCACUUGGCAAAAAAGAAUAUACC (((((((((((((.((((..((((...((((.(((..((..((......))..))...)))))))...)))))))).)))))))..))))))(((.......)))........ (-26.83 = -26.17 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:51 2006