Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,244,082 – 8,244,175 |
Length | 93 |
Max. P | 0.819576 |
Location | 8,244,082 – 8,244,175 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.94 |
Mean single sequence MFE | -26.40 |
Consensus MFE | -12.06 |
Energy contribution | -12.62 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.08 |
Mean z-score | -2.53 |
Structure conservation index | 0.46 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8244082 93 + 22224390 UAAAACCACACUUUGAAUUCGAAAUCAACCCUAACACAGUCUGUUCC---UCGGCUGUUAACUAACA------------------------GCCCGGCUUGAUCAUGCAUUCGACCGAUU ............((((((.((..(((((.((.((((.....))))..---..(((((((....))))------------------------))).)).)))))..)).))))))...... ( -20.50) >DroSec_CAF1 145170 88 + 1 -------ACACUUUAAAUUCGAACUCAAGCCUAACAGAGUCUGUUCC-CCCCGGCUGUUAACUAACA------------------------GCCCGGCUUGAUCGUGCACUCGACCGAUU -------...........(((...(((((((.(((((...)))))..-....(((((((....))))------------------------))).)))))))(((......))).))).. ( -25.80) >DroSim_CAF1 108977 88 + 1 -------ACACUUUAAAUUCGAACUCAAGCCUAACAGAGUCUGUUCC-CCCCGGCUGUUAACUAACA------------------------GCCCGGCUUGAUCGUGCACUCGACCGAUU -------...........(((...(((((((.(((((...)))))..-....(((((((....))))------------------------))).)))))))(((......))).))).. ( -25.80) >DroEre_CAF1 134412 119 + 1 UAACAG-CCACUUUAAAUUUCAAUUCAAACCUAACAGAGUCUGUUGCGGCCCGGCUGUUAACUAACAGCGGCGUACGUCAGGCGCCGUCCAGCCCGGUUUGAUCGUGCAUUCGACCGAUU ......-............((...(((((((.(((((...)))))(((((((.((((((....))))))(((....))).)).))))).......)))))))(((......)))..)).. ( -33.50) >consensus _______ACACUUUAAAUUCGAACUCAAGCCUAACAGAGUCUGUUCC_CCCCGGCUGUUAACUAACA________________________GCCCGGCUUGAUCGUGCACUCGACCGAUU ..................(((...(((((((.(((((...))))).......(((((((....))))........................))).)))))))(((......))).))).. (-12.06 = -12.62 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:41 2006