Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,230,613 – 8,230,706 |
Length | 93 |
Max. P | 0.757421 |
Location | 8,230,613 – 8,230,706 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 90.55 |
Mean single sequence MFE | -24.90 |
Consensus MFE | -21.85 |
Energy contribution | -21.97 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.01 |
Structure conservation index | 0.88 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757421 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8230613 93 + 22224390 AGUGGUUGACUCGGAUUAGCAGCGUUGACUAACGAAUGAGUGAGCAUGGUAGUGCAUUAUGUAUGACCGGUGUGGGCUAAUUUGAUUGAAACA .((..(..(.((((((((((.(((((.(((........))).))).((((.((((.....)))).))))..))..)))))))))))..).)). ( -26.90) >DroSec_CAF1 131582 86 + 1 -------GACUCGGAUUAGCAGCGUUGACUAACGAAUGAGUGAGCAUGGGAGUGCAUUAUGUAUGACCGGUGUGGGCUAAUUUGAUUGAAACA -------...((((((((((.(((((.(((........))).))).(((..((((.....))))..)))..))..))))))))))........ ( -25.10) >DroEre_CAF1 120710 85 + 1 ----GUUGACUCGGAUUAGCAGCGUUGACUAACGAAUGAGUGGGCA--GGAGUGCAUUAUGUAUGACCGGUGUGGGCUAAUUUGAUUGAAA-- ----.(..(.((((((((((.(((((.(((........))).))).--((.((((.....))))..))...))..)))))))))))..)..-- ( -22.70) >consensus ____GUUGACUCGGAUUAGCAGCGUUGACUAACGAAUGAGUGAGCAUGGGAGUGCAUUAUGUAUGACCGGUGUGGGCUAAUUUGAUUGAAACA ..........((((((((((.(((((.(((........))).)))..((..((((.....))))..))...))..))))))))))........ (-21.85 = -21.97 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:31 2006