Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 984,347 – 984,459 |
Length | 112 |
Max. P | 0.953633 |
Location | 984,347 – 984,459 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.15 |
Mean single sequence MFE | -35.58 |
Consensus MFE | -13.37 |
Energy contribution | -16.25 |
Covariance contribution | 2.88 |
Combinations/Pair | 1.08 |
Mean z-score | -2.25 |
Structure conservation index | 0.38 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953633 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 984347 112 - 22224390 AGAGAUCUCCGCCAGCAGAUCUAGCCCGA--------ACUGGUGGAGCCUCUUCUCCUGGCUUCUUCCGCAGUCUCGCAGUCUUCUGCUGCCCCCUCCCAAUUCACUACUGGGUUGGCUU .(((((.((((((((..(........)..--------.))))))))(((.........)))..........)))))((((....)))).(((....((((.........))))..))).. ( -34.80) >DroSec_CAF1 67052 97 - 1 GGAGAUCUCCGCCAGCCGAUCUAGCCCGACCUGGUG-ACUGGUGGAGCCUCUUCUCCUGGCUUCUUCCGCA--------GUCUUCUGCUGCCCCCUCCCAAUUUA---C----------- ((((......(((((..((....((((.(((.(...-.).))))).))....))..))))).......(((--------((.....)))))...)))).......---.----------- ( -31.70) >DroSim_CAF1 46309 108 - 1 GAAGAUCUCCGCCAGCCGAUCUAGCCCGACCUGGUG-ACUGGUGGAGCCUCUUCUCCUGGCUUCUUCCGCA--------GUCUUCUGCUGCCCCCUCCCAAUUUA---CUGGGUUGGUUU (((((.(((((((((.((..((((......))))))-.)))))))))..)))))....(((.......(((--------(....)))).)))((..((((.....---.))))..))... ( -37.60) >DroEre_CAF1 80429 105 - 1 UGG---CUUCG-CAGGAGAUUUACCCCGAAC--------UGGUGGAGCCUCUUCUGCUGGCUUCUUCCGCAGUCCCGCAGUCUUCGGCUGCCCCCUCCCGAUCCA---CUGGUUUGGUUU ...---(((..-...))).......((((((--------..(((((.......((((.((......))))))....((((.(....)))))..........))))---)..))))))... ( -33.80) >DroYak_CAF1 72632 109 - 1 GGAGAUCUCCGCCAGCAGAUCUACCCCGAACUGCUGAACUGGUACAGCCUCUUCUCCAGGCUUCUUCCGC--------AGUCUUCAGCUGCCCUCUCCCGGUUCA---CUGGUUUGGUUU ((((((((.(....).)))))).))(((((((..((((((((...(((((.......)))))......((--------(((.....)))))......))))))))---..)))))))... ( -40.00) >consensus GGAGAUCUCCGCCAGCAGAUCUAGCCCGAACUG_UG_ACUGGUGGAGCCUCUUCUCCUGGCUUCUUCCGCA_______AGUCUUCUGCUGCCCCCUCCCAAUUCA___CUGGGUUGGUUU ..((((((.(....).))))))...((((((.........((.((((((.........))))))..))(((.................)))....................))))))... (-13.37 = -16.25 + 2.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:18 2006