Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,196,271 – 8,196,386 |
Length | 115 |
Max. P | 0.611970 |
Location | 8,196,271 – 8,196,386 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 75.75 |
Mean single sequence MFE | -32.95 |
Consensus MFE | -14.01 |
Energy contribution | -16.15 |
Covariance contribution | 2.14 |
Combinations/Pair | 1.12 |
Mean z-score | -1.96 |
Structure conservation index | 0.43 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522192 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8196271 115 + 22224390 CAUGUCCCAGACGUCAGAAGUUGCAACAAGAGACAAGUUGGAGACGCAGGAGCGCAGUGCUCGGG-AUGC--GAAUGGAUGAAUAGGGGAAAGGUGCAGGAAAAUCCUGGGGACAGGA ..((((((...((((.....(((((.(..(((((.....(....)((......)).)).)))..)-.)))--))...))))...............((((.....))))))))))... ( -34.90) >DroSec_CAF1 98517 114 + 1 CAUGUCCCAGACGUCAGAAGUUGCAACCAGAGACAAGUUGGAGACGCAGGAGCACAGUGCUCGGG-AUGC--GAAUGGAUGAAUGGGG-AGAGGUGCAGGAAAAUCCUGGGGACAGGA ....(((((..((((.....(((((.((.(((((.....(....)((....))...)).))).))-.)))--))...))))..)))))-...............(((((....))))) ( -38.10) >DroSim_CAF1 78287 115 + 1 CAUGUCCCAGACGUCAGAAGUUGCAACAAGAGACAAGUUGGAGACGCAGGAGCGCAGUGCUCGGG-AUGC--GAAUGGAUGAAUGGGGAAGAGGUGCAGGAAAAUCCUGGGGACAGGA ....(((((..((((.....(((((.(..(((((.....(....)((......)).)).)))..)-.)))--))...))))..)))))................(((((....))))) ( -36.10) >DroEre_CAF1 88653 116 + 1 CAUGUCCCAGACGUCACAAGUUGCAACAAGAGACAAGUUGGAGACGCUAGAGAGCAGUACUCGGGGCUGCAAGAAUGGAUGG--GGGGGAAAGGUGCAGGAAAAUCCUGGGGACAGGA (((.((((...((((.((..(((((.(..(((((.....(....)(((....))).)).)))..)..)))))...)))))).--..))))...)))........(((((....))))) ( -37.10) >DroYak_CAF1 87601 104 + 1 CAUGUCGCAGCCGUCAGAAGUUGCAACAAGAGACAAGUUGGAGACGCAAGAGAGU------------UGCAAAGGCUGGUUG--GGGGAAAAGGUGCAGGAAAAUCCUGGGGACAGGA ..(.((.((((((((.....(((((((....((....))(....)........))------------))))).))).)))))--.)).)...............(((((....))))) ( -29.30) >DroAna_CAF1 136764 95 + 1 --------AGCCGUCACAAGUUGCAACAAGCGACAAGUUAGAGACCA--GAGG---GUGUGCGGG-G--------GGGAUUGGCGGCG-AGACAAGCGACAGGAUGCAGUGAACAGGA --------.(((((((...(((((.....))))).......(.(((.--...)---)).).....-.--------.....))))))).-......(((......)))........... ( -22.20) >consensus CAUGUCCCAGACGUCAGAAGUUGCAACAAGAGACAAGUUGGAGACGCAGGAGCGCAGUGCUCGGG_AUGC__GAAUGGAUGAAUGGGG_AAAGGUGCAGGAAAAUCCUGGGGACAGGA ..((((((...((((....(((.((((.........))))..)))....(((.......)))...............))))...............((((.....))))))))))... (-14.01 = -16.15 + 2.14)
Location | 8,196,271 – 8,196,386 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 75.75 |
Mean single sequence MFE | -23.58 |
Consensus MFE | -13.74 |
Energy contribution | -14.77 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.14 |
Mean z-score | -1.48 |
Structure conservation index | 0.58 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611970 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8196271 115 - 22224390 UCCUGUCCCCAGGAUUUUCCUGCACCUUUCCCCUAUUCAUCCAUUC--GCAU-CCCGAGCACUGCGCUCCUGCGUCUCCAACUUGUCUCUUGUUGCAACUUCUGACGUCUGGGACAUG ...((((((((((.....))))........................--....-...((((.....))))..(((((...((.((((........)))).))..)))))..)))))).. ( -25.00) >DroSec_CAF1 98517 114 - 1 UCCUGUCCCCAGGAUUUUCCUGCACCUCU-CCCCAUUCAUCCAUUC--GCAU-CCCGAGCACUGUGCUCCUGCGUCUCCAACUUGUCUCUGGUUGCAACUUCUGACGUCUGGGACAUG ...((((((((((.....)))).......-...............(--(((.-...((((.....)))).))))..........(((...(((....)))...)))....)))))).. ( -26.70) >DroSim_CAF1 78287 115 - 1 UCCUGUCCCCAGGAUUUUCCUGCACCUCUUCCCCAUUCAUCCAUUC--GCAU-CCCGAGCACUGCGCUCCUGCGUCUCCAACUUGUCUCUUGUUGCAACUUCUGACGUCUGGGACAUG ...((((((((((.....))))........................--....-...((((.....))))..(((((...((.((((........)))).))..)))))..)))))).. ( -25.00) >DroEre_CAF1 88653 116 - 1 UCCUGUCCCCAGGAUUUUCCUGCACCUUUCCCCC--CCAUCCAUUCUUGCAGCCCCGAGUACUGCUCUCUAGCGUCUCCAACUUGUCUCUUGUUGCAACUUGUGACGUCUGGGACAUG ...((((((((((.....))))............--.....(((..(((((((...(((.((.(((....)))((.....))..)))))..)))))))...)))......)))))).. ( -27.40) >DroYak_CAF1 87601 104 - 1 UCCUGUCCCCAGGAUUUUCCUGCACCUUUUCCCC--CAACCAGCCUUUGCA------------ACUCUCUUGCGUCUCCAACUUGUCUCUUGUUGCAACUUCUGACGGCUGCGACAUG ...((((..((((.....))))............--....(((((...(((------------(.....))))(((...((.((((........)))).))..)))))))).)))).. ( -22.70) >DroAna_CAF1 136764 95 - 1 UCCUGUUCACUGCAUCCUGUCGCUUGUCU-CGCCGCCAAUCCC--------C-CCCGCACAC---CCUC--UGGUCUCUAACUUGUCGCUUGUUGCAACUUGUGACGGCU-------- ...........((........))......-.(((((((.....--------.-.........---....--)))).........(((((..((....))..)))))))).-------- ( -14.71) >consensus UCCUGUCCCCAGGAUUUUCCUGCACCUCU_CCCCAUCCAUCCAUUC__GCAU_CCCGAGCACUGCGCUCCUGCGUCUCCAACUUGUCUCUUGUUGCAACUUCUGACGUCUGGGACAUG ...((((((((((.....)))).................................................(((((...((.((((........)))).))..)))))..)))))).. (-13.74 = -14.77 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:11 2006