Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,178,213 – 8,178,307 |
Length | 94 |
Max. P | 0.602374 |
Location | 8,178,213 – 8,178,307 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 79.11 |
Mean single sequence MFE | -27.18 |
Consensus MFE | -19.54 |
Energy contribution | -19.78 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.18 |
Mean z-score | -1.47 |
Structure conservation index | 0.72 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8178213 94 - 22224390 GCCGCCUAAUGAGCGCCCAUAAUGAGCGACAAAUGUGGUG----GGGGUGGUUCAGUUU--UUCUUU-UUUGGGGGAGGGGGUAAGUGGGUGGUGGUGCGA ((((((((....((.(((....(((((.((..........----...)).)))))..((--..((..-...))..))))).))...))))))))....... ( -30.02) >DroSec_CAF1 81413 86 - 1 GCCGCCUAAUGAGCGCCCAUAAUGAGCGACAAAUGUGGUG----GGGGUGGUUCAGUUUUUUUCUUU-UUUGG-----GGGGUAAGUGGGUGGGGG----- .(((((((.(((((((((.......((.((....)).)).----.)))).))))).....(..(((.-...))-----)..)....)))))))...----- ( -26.00) >DroSim_CAF1 63828 87 - 1 GCCGCCUAAUGAGCGCCCAUAAUGAGCGACAAAUGUGGUG----GGGGUGGUUCAGUUUUUUUCUUUUUUUGG-----GGGGUAAGUGGGUGGGGG----- .(((((((.(((((((((.......((.((....)).)).----.)))).)))))....((..((......))-----..))....)))))))...----- ( -26.20) >DroEre_CAF1 71544 79 - 1 GCCGCCUAAUGAGCGCCCAUAAUGAGCGACAAAUGUGGUG----GGGGUGGUUCGGUUUUUUUU---------------GGGUAAGUGGGUGGUGG---GC ((((((((.....(((((.......((.((....)).)).----.)))))(..(((......))---------------)..)...))))))))..---.. ( -24.00) >DroAna_CAF1 111004 83 - 1 GCCGCCUAAUGAGGGCCCAUAAUGAGCGACAAAUGUGGUGCAAGAGGGGGGCUGGGGCU----------GCGG-----GGCAUAAGUGGGUGGUGG---CA ((((((((......((((....((.((.((....)).)).)).....(.(((....)))----------.).)-----))).....))))))))..---.. ( -29.70) >consensus GCCGCCUAAUGAGCGCCCAUAAUGAGCGACAAAUGUGGUG____GGGGUGGUUCAGUUUUUUUCUUU_UUUGG_____GGGGUAAGUGGGUGGUGG_____ .(((((((.(((((((((.......((.((....)).))......)))).)))))..............((........)).....)))))))........ (-19.54 = -19.78 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:57 2006