Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,173,861 – 8,173,955 |
Length | 94 |
Max. P | 0.877248 |
Location | 8,173,861 – 8,173,955 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 93.72 |
Mean single sequence MFE | -23.56 |
Consensus MFE | -19.70 |
Energy contribution | -19.86 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -1.63 |
Structure conservation index | 0.84 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877248 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8173861 94 + 22224390 GCAAUAAAGCCUGGCACAGACAAUAACAGCUAACCUCGGUCCUGGAAAGCCUCGACUGGAUCCUCAUCAUCCCAGGAUUUCAUUCCUGGCCACC---- ((......)).((((....................((((((..((....))..)))))).............(((((......)))))))))..---- ( -21.90) >DroSec_CAF1 77129 94 + 1 GCAAUAAAGCCUGGCACAGACAAUAACAGUUAACCUCGGUCCUGGAAAGCCUCGCCAGGAUCCACAUCAUCCCAGGAUUUUAUUUCUGGCCACC---- ((......)).((((.((((.(((((...........((((((((.........))))))))......(((....))).)))))))))))))..---- ( -25.00) >DroSim_CAF1 59653 94 + 1 GCAAUAAAGCCUGGCACAGACAAUAACAGCUAACCUCGGUCCUGGAAAGCCUCGCCAGGAUCCUCAUCAUCCCAGGAUUUCAUUUCUGGCCACC---- ((......)).((((.((((.................((((((((.........))))))))......(((....)))......))))))))..---- ( -23.70) >DroEre_CAF1 67237 94 + 1 GCAAUAAAGCCUGGCAUAGACAAUAACAGCUAACCUCGGUGCUGGAAAGCCUCUGCAGGAUCCUCAUCAUCCCAGGAUUUCAUUCCUGGCCACC---- ((......)).((((..................((((((.(((....)))..))).))).............(((((......)))))))))..---- ( -24.20) >DroYak_CAF1 65003 98 + 1 GCAAUAAAGCCUGGCACAGACAAUAACAGCUAACCUCGGUCCUGGAAAGCCUCUGCAGGAUCCUCAUCAUCCCAGGAUUUCAUUCCUGGCCACCGAAC ((......)).((((......................(((((((.(.......).)))))))..........(((((......)))))))))...... ( -23.00) >consensus GCAAUAAAGCCUGGCACAGACAAUAACAGCUAACCUCGGUCCUGGAAAGCCUCGCCAGGAUCCUCAUCAUCCCAGGAUUUCAUUCCUGGCCACC____ ((......)).((((......................(((((((...........)))))))..........(((((......)))))))))...... (-19.70 = -19.86 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:54 2006