Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,164,195 – 8,164,285 |
Length | 90 |
Max. P | 0.545126 |
Location | 8,164,195 – 8,164,285 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 89.71 |
Mean single sequence MFE | -14.88 |
Consensus MFE | -10.84 |
Energy contribution | -11.04 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.10 |
Mean z-score | -1.69 |
Structure conservation index | 0.73 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8164195 90 + 22224390 UUAGUGGCUAAUAAAUCCCACUCCCCCAUUUAUGCUAUGUUUCCUCGAGCAGCCACAAAUCGCACCAAUAAUGUUAAACAUACAAUUGCU ...((((((.((((((...........))))))(((.((......))))))))))).....(((......(((.....))).....))). ( -14.40) >DroSec_CAF1 67500 87 + 1 UUAGUGGCUAAUAAAUCCCAC-CC--CAUUUAUGCUACGUUUCCUCGAGCGGCCACAAAUCGCAGCAAUAAUGUUAAACAUACAAUUGCU ...((((((.((((((.....-..--.))))))(((.((......))))))))))).......((((((.(((.....)))...)))))) ( -20.30) >DroSim_CAF1 49141 89 + 1 UUAGUGGCUAAUAAAUCCCAC-CCCUCAUUUAUGCUACGUUUCCUCGAGCGGCCACAAAUCGCACCAAUAAUGUUAAACAUACAAUUGCU ...((((((.((((((.....-.....))))))(((.((......))))))))))).....(((......(((.....))).....))). ( -16.60) >DroEre_CAF1 57429 87 + 1 UUAGUGGCUAAUAAAUCCAUC---CCCAUUUCUGCUAGGUUUCCUUGAGCAGCCACAAAUCGCACAAAUAAUGUUAAACAUACAAUUGCA ...((((((...((((.....---...))))..((((((...)))..))))))))).....(((......(((.....))).....))). ( -13.70) >DroYak_CAF1 54768 89 + 1 UUAGUGACUAAUAAAUGCCAC-CACCCAUUUCUGUUAGUUUUCCUCGAGCAGCCACAAAUCGCACCAAUAAUGUUAAACAUACAAAUGCA .....((((((((((((....-....))))..))))))))........(((((........)).......(((.....))).....))). ( -9.40) >consensus UUAGUGGCUAAUAAAUCCCAC_CCCCCAUUUAUGCUACGUUUCCUCGAGCAGCCACAAAUCGCACCAAUAAUGUUAAACAUACAAUUGCU ...((((((.((((((...........))))))(((...........))))))))).....(((......(((.....))).....))). (-10.84 = -11.04 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:46 2006