Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,135,556 – 8,135,651 |
Length | 95 |
Max. P | 0.835169 |
Location | 8,135,556 – 8,135,651 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 81.99 |
Mean single sequence MFE | -26.73 |
Consensus MFE | -18.85 |
Energy contribution | -18.74 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.10 |
Mean z-score | -1.70 |
Structure conservation index | 0.71 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606331 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8135556 95 + 22224390 CGGUGGCGUUUCGGCAUUUCGAGCGAACUGCGAACUGUUCCACAGUUUGUGUUCUGUUUUAUUUCGCUGCCUGCUUUUAGGCGCAAAUAUUUGCC .((..(((.(((((....))))).((((.((((((((.....))))))))))))..........)))..)).(((....)))((((....)))). ( -30.60) >DroEre_CAF1 25847 82 + 1 CGGUGGCG----GGAAUUUCGGGCG---------CAGUUCCGCAGCUCGUGCUUUGUUUUAUUUCGCUGCCUGCUUUUAGGCGCAAAUAUUUGCC .((..(((----..(.....(((((---------((((......))).)))))).......)..)))..)).(((....)))((((....)))). ( -25.80) >DroYak_CAF1 27190 78 + 1 CGGUGGCG----GGAAUUUC----G---------CAGUUCCGCAGUUUGUGCUCUGUUUUAUUUCGCUGCCUGCUUUUAGGCGCAAAUAUUUGCC .((..(((----..(.....----(---------(((...(((.....)))..))))....)..)))..)).(((....)))((((....)))). ( -23.80) >consensus CGGUGGCG____GGAAUUUCG_GCG_________CAGUUCCGCAGUUUGUGCUCUGUUUUAUUUCGCUGCCUGCUUUUAGGCGCAAAUAUUUGCC .((..(((....(((((...................)))))((((........)))).......)))..)).(((....)))((((....)))). (-18.85 = -18.74 + -0.11)
Location | 8,135,556 – 8,135,651 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 81.99 |
Mean single sequence MFE | -22.17 |
Consensus MFE | -17.28 |
Energy contribution | -16.83 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -1.92 |
Structure conservation index | 0.78 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8135556 95 - 22224390 GGCAAAUAUUUGCGCCUAAAAGCAGGCAGCGAAAUAAAACAGAACACAAACUGUGGAACAGUUCGCAGUUCGCUCGAAAUGCCGAAACGCCACCG (((.......(((........)))(((((((((.....((((........)))).......)))))..(((....))).)))).....))).... ( -25.30) >DroEre_CAF1 25847 82 - 1 GGCAAAUAUUUGCGCCUAAAAGCAGGCAGCGAAAUAAAACAAAGCACGAGCUGCGGAACUG---------CGCCCGAAAUUCC----CGCCACCG (((.....(((((((((......)))).))))).............((.((.(((....))---------))).)).......----.))).... ( -21.70) >DroYak_CAF1 27190 78 - 1 GGCAAAUAUUUGCGCCUAAAAGCAGGCAGCGAAAUAAAACAGAGCACAAACUGCGGAACUG---------C----GAAAUUCC----CGCCACCG (((.....(((((((((......)))).)))))..........(((.....)))((((...---------.----....))))----.))).... ( -19.50) >consensus GGCAAAUAUUUGCGCCUAAAAGCAGGCAGCGAAAUAAAACAGAGCACAAACUGCGGAACUG_________CGC_CGAAAUUCC____CGCCACCG (((.....(((((((((......)))).)))))..........(((.....)))..................................))).... (-17.28 = -16.83 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:39 2006