Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 980,232 – 980,324 |
Length | 92 |
Max. P | 0.758342 |
Location | 980,232 – 980,324 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 82.78 |
Mean single sequence MFE | -13.91 |
Consensus MFE | -8.96 |
Energy contribution | -9.65 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.14 |
Mean z-score | -1.97 |
Structure conservation index | 0.64 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.758342 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 980232 92 + 22224390 GUUGGCACGACAAAAAAUCAAAAUUAAUGUUAGCAUCAUCGUGUGUCUACACAGAAAGAGAAAAAACCACACGAACAGUGCUAUAAAAAUAU ..((((((..................(((....)))..((((((((((........)))........)))))))...))))))......... ( -16.30) >DroSec_CAF1 63127 88 + 1 GAUGGUACCACAAAAAAUCAAAAUUAAUGUUAACA---UCGUGUGUCUACACGGGAAAAGAAAAAAACACACGAACAGUGCUAUAAAAAUC- .(((((((...................((....))---((((((((....................))))))))...))))))).......- ( -14.85) >DroSim_CAF1 42282 88 + 1 GUUGGCACCACAAAAAAUCAAAAUUAAUGUUAACA---UCGUGUGUCUACACGGGAAAAGAAAAAACCACACGAACAGUGCUAUAAAAAUC- ..((((((...................((....))---((((((((((.....)))...........)))))))...))))))........- ( -14.30) >DroYak_CAF1 68587 86 + 1 UUUCGCACGACAAAAAACCAAAAUAAUAGCUAACA---UCGUGUGUCUACACAGAAAA--CAAAACCUACACGAUCAGCUCUUUAAGAAUC- .......................(((.((((...(---((((((((((....)))...--.......)))))))).))))..)))......- ( -10.20) >consensus GUUGGCACCACAAAAAAUCAAAAUUAAUGUUAACA___UCGUGUGUCUACACAGAAAAAGAAAAAACCACACGAACAGUGCUAUAAAAAUC_ ..((((((....................(....)....(((((((......................)))))))...))))))......... ( -8.96 = -9.65 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:13 2006