Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,102,911 – 8,103,031 |
Length | 120 |
Max. P | 0.962534 |
Location | 8,102,911 – 8,103,031 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -31.76 |
Consensus MFE | -29.74 |
Energy contribution | -30.34 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.94 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962534 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8102911 120 + 22224390 CGUUUGGCUUAGAAACAAACGCAACAACUUUCAGUUGUCUGCCGACGAUUUUGCUUUGCGGCGAUUUUUUCCAUGUUUUUCUAGGCUUAUCUGACUCGUGGGGCCCCAUUAUUGUCUUAG .(...((((((((((..(((((((((((.....))))).))).((.((..(((((....)))))..)).))...)))))))))))))...).(((..((((....))))....))).... ( -31.70) >DroSec_CAF1 8248 120 + 1 CGUUUGGCUUAGAAACAAACGCAACAACUUUCAGUUCUCUGCCGCCGAUUUUGCUUUGCGGCGAUUUUUUCCAUGUUUUUCUAGGCUUAUCUGACUCGUGGGGCUCCAUUAUUGUCUUAG .(...((((((((((..((((((..(((.....)))...)))(((((...........)))))...........)))))))))))))...).(((..((((....))))....))).... ( -27.30) >DroSim_CAF1 13545 120 + 1 CGUUUGGCUUAGAAACAAACGCAACAACUUUCAGUUGUCUGCCGCCGAUUUUGCUUUGCGGCGAUUUUUUCCAUGUUUUUCUAGGCUUAUCUGACUCGUGGGGCCCCAUUAUUGUCUUAG .(...((((((((((..(((((((((((.....))))).)))(((((...........)))))...........)))))))))))))...).(((..((((....))))....))).... ( -34.10) >DroEre_CAF1 7823 119 + 1 CGUUUGGCUUAGAAACAAACGCAACAACUUUCAGUUGUCUGCCGCCGAUUUUGCUUUGCGGCGAUUUUUUCCAUGUUUUUCUAGGCUUAUCUGCCUUGUGG-GCCCCAUUAUUGUCUUAG .(...((((((((((..(((((((((((.....))))).)))(((((...........)))))...........)))))))))))))...).(((.....)-))................ ( -30.90) >DroYak_CAF1 11185 120 + 1 CGUUUGGCUUAGAAACAAACGCAACAACUUUCAGUUGUCUGCCGCCGAUUUUGCUUUGCGGCGAUUUUUUCCAUGUUUUUCUAGGCUUAUCUGACUUGUGGGGCCCCAUUAUUGUCUUAG .(...((((((((((..(((((((((((.....))))).)))(((((...........)))))...........)))))))))))))...).(((..((((....))))....))).... ( -34.80) >consensus CGUUUGGCUUAGAAACAAACGCAACAACUUUCAGUUGUCUGCCGCCGAUUUUGCUUUGCGGCGAUUUUUUCCAUGUUUUUCUAGGCUUAUCUGACUCGUGGGGCCCCAUUAUUGUCUUAG .(...((((((((((..(((((((((((.....))))).)))(((((...........)))))...........)))))))))))))...).(((..((((....))))....))).... (-29.74 = -30.34 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:21 2006