Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,007,162 – 8,007,271 |
Length | 109 |
Max. P | 0.515961 |
Location | 8,007,162 – 8,007,271 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 80.55 |
Mean single sequence MFE | -48.40 |
Consensus MFE | -33.73 |
Energy contribution | -35.07 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.31 |
Mean z-score | -1.18 |
Structure conservation index | 0.70 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.515961 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8007162 109 - 22224390 CGAGCAACUGGAUGCUGUGGGUCUACCCCUGCCCGGUGCUCCGCUGAGCGAUGAGUACUUCGAUGAGCUGGAGCGCGAGUAUCCGGCCUCGGAUGGCCUAAUUGGCGGU ((((...(((((((((.(((((........)))))((((((((((.(.(((........))).).))).))))))).))))))))).)))).((.(((.....))).)) ( -48.70) >DroSec_CAF1 6034 109 - 1 CGAGCAACUGGAUGCUGUGGGUCUACCCCUGCCCGGUGCUCCGCUGAGCGAUGAGUACUUCGAUGAGCUGGAGCGCGAGCAUCCGGUCUCGGAUGGCCUAAUUGGCGGU ((((..((((((((((.(((((........)))))((((((((((.(.(((........))).).))).))))))).)))))))))))))).((.(((.....))).)) ( -52.30) >DroSim_CAF1 5722 109 - 1 CGAGCAACUGGAUGCUGUGGGUCUACCCCUGCCCGGUGCUCCGCUGAGCGAUGAGUACUUCGAUGAGCUGGAGCGCGAGCAUCCGGCCUCGGAUGGCCUAAUUGGCGGU ((((...(((((((((.(((((........)))))((((((((((.(.(((........))).).))).))))))).))))))))).)))).((.(((.....))).)) ( -50.70) >DroEre_CAF1 6037 109 - 1 CGAGCAUCUGGAUGCUUUGGGUCUGCCCCUGCCCGGCGCGCCGCUGGACGAUAAUUACUUCGAUGAGCUGGAGCGCGAGUAUCCGGAAGCGGAUGGCCCAAUGGGCGGU ...((.((((((((((((((((........)))))((((.(((((.(.(((........))).).))).)).))))))))))))))).))..((.((((...)))).)) ( -49.10) >DroYak_CAF1 6116 109 - 1 CGAGCAUCUGGAUGCUGCGGGUCAGCCACUGCCCGGUGCUCCGCUGGACGACGGGUACUUCGAUGAGCUGGAACGCGAGCAUCUGGACGCGGAUGGCCCACUGGGCGCU ...((.((..(((((((((..((((((((((((((.((.(((...))))).))))))....).)).)))))..))).))))))..)).)).....((((...))))... ( -49.30) >DroAna_CAF1 6817 109 - 1 GGAUCAGAUCGAUGAAGACGGGGACCCGCUGCCGGGGGCACCGCUUGGUGAUGACUACUUCGACGACCUGGAACGGGACUAUCCGCCGGCGGAGGCCCUGCAGCCUGGA ...((((............((....))(((((.((((.(.(((((.((((.(((.....)))....((((...))))......))))))))).).))))))))))))). ( -40.30) >consensus CGAGCAACUGGAUGCUGUGGGUCUACCCCUGCCCGGUGCUCCGCUGAGCGAUGAGUACUUCGAUGAGCUGGAGCGCGAGCAUCCGGCCGCGGAUGGCCUAAUGGGCGGU ......((((((((((.(((((........)))))((((((((((.(.(((........))).).))).))))))).))))))))))........(((.....)))... (-33.73 = -35.07 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:46 2006