Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 125,921 – 126,041 |
Length | 120 |
Max. P | 0.635349 |
Location | 125,921 – 126,041 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.50 |
Mean single sequence MFE | -36.74 |
Consensus MFE | -26.36 |
Energy contribution | -28.64 |
Covariance contribution | 2.28 |
Combinations/Pair | 1.03 |
Mean z-score | -1.92 |
Structure conservation index | 0.72 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635349 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 125921 120 - 22224390 AUUAAUUCCGGCAACGUAAAGUCCGAAGACACGAUUAUUAUGGAACAAUAGCUGGAGCCCAUAGAAGGCAUGAUUUCGCCUGGAUUAAGCGAUUGACGUGCCAUGUUUUCUGGGCAUCGU ......((((((..(((...(((....)))))).....(((......)))))))))(((((.((((((((((...((((.........))))....))))))...)))).)))))..... ( -34.90) >DroSec_CAF1 14060 120 - 1 AUUAAUUCCGGCAACGUGAAGUCCGAAGACACGAUUAUUAUGGAACAAUAGCUGUAGCCCAUAGAAGGCAUGAUUUCGCCUGGAUUAAGCGAUUGACGUGCCGUGUUUUCUGGGCCUCGU .....(((((....)).)))((((((((((((.....((((((.(((.....)))...))))))..((((((...((((.........))))....)))))))))))))).))))..... ( -39.50) >DroSim_CAF1 19588 120 - 1 AUUAAUUCCGGCAACGUGAAGUCCGAAGACACGAUUAUUAUGGAACAAUAGCUGUAGCCCAUAGAAGGCAUGAUUUCGCCUGGAUUAAGCGAUUGACGUGCCGUGUUUUCUGGGCCUCGU .....(((((....)).)))((((((((((((.....((((((.(((.....)))...))))))..((((((...((((.........))))....)))))))))))))).))))..... ( -39.50) >DroEre_CAF1 20667 104 - 1 AUUAAUUCCGGCAACGUGAAGUCUGAAGACACGAUUAUUAUGGAACAAUAGCUGGAUCCCAUAGAAGGCAUAAUCUCGCCUGGAUUGAGCGAUUGACGUGCCAU---------------- .........((((.(((...(((....)))...............((((.(((.(((((......((((........))))))))).))).)))))))))))..---------------- ( -30.80) >DroYak_CAF1 17012 120 - 1 AUUAAUUCCGGCAACGUGAAGUCUGAAGACACGAUUAUUAUGGAACAAUAGCUGGAGCCCAUAGAAGGCAUGAUCUCGCCUGAGUUGAGCGAUUGACGUGCCGUAUUCUCUGGGCCUCGA ......((((((..(((...(((....)))))).....(((......)))))))))(((((.((((((((((.(((((((......).))))..))))))))...)))).)))))..... ( -39.00) >consensus AUUAAUUCCGGCAACGUGAAGUCCGAAGACACGAUUAUUAUGGAACAAUAGCUGGAGCCCAUAGAAGGCAUGAUUUCGCCUGGAUUAAGCGAUUGACGUGCCGUGUUUUCUGGGCCUCGU ......((((((..(((...(((....)))))).....(((......)))))))))(((((.((((((((((...((((.........))))....))))))...)))).)))))..... (-26.36 = -28.64 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:49 2006