Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,982,685 – 7,982,775 |
Length | 90 |
Max. P | 0.824218 |
Location | 7,982,685 – 7,982,775 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 91.90 |
Mean single sequence MFE | -36.12 |
Consensus MFE | -35.10 |
Energy contribution | -33.78 |
Covariance contribution | -1.32 |
Combinations/Pair | 1.27 |
Mean z-score | -1.21 |
Structure conservation index | 0.97 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824218 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7982685 90 - 22224390 AAAAAUAACUGUACCGCCUGGCCAGUGUUGGGCAGUGAAUGGUGCGUGGCGGGC--AGUGUUGCCUAGCGCACUUGUCCUCUGGUUCCGGCG ..............((((.((((((....(((((......(((((((...((((--......)))).)))))))))))).))))))..)))) ( -35.90) >DroSec_CAF1 4948 92 - 1 AAAAAUAACUGUACCGCCUGGCCAGUGUUGGGCAGUGAAUGGUGCGUGGCGGGCACAGUGCUGCCUAGCGCACUUGUCCUCUGGUUCCGGCG ..............((((.((((((....(((((......((((((((((((........)))))..)))))))))))).))))))..)))) ( -36.40) >DroSim_CAF1 4889 92 - 1 AAAAAUAACUGUACCGCCUGGCCAGUGUUGGGCAGUGAAUGGUGCGCGGCGGGCACAGUGCUGCCUAGCGCACUUGUCCUCUGGUUCCGGCG ..............((((.((((((....(((((......(((((((...(((((......))))).)))))))))))).))))))..)))) ( -38.00) >DroEre_CAF1 4897 90 - 1 AAAAAUAACUGUACCGCCUGGCCAGUGUUGGACGGUGCAUAGUACGUGGCGGCU--AGUGUUGGCCAGCGCACUUGUCCCCUGGUUCCGGCG ..............((((.((((((.(..(((((((((...))))(((((((((--(....))))).)).))).))))))))))))..)))) ( -31.80) >DroYak_CAF1 4952 90 - 1 AAAAAUAACUGUACCGCCUGGCCAGUGUUGGGCAGUGUAUGGUGCGUGGCGGCC--AGUGUUGGCCAGCGCACUUGUCCGCUGGUUCCGGCG ..............((((.(((((((...(((((......(((((((...((((--......)))).)))))))))))))))))))..)))) ( -38.50) >consensus AAAAAUAACUGUACCGCCUGGCCAGUGUUGGGCAGUGAAUGGUGCGUGGCGGGC__AGUGUUGCCUAGCGCACUUGUCCUCUGGUUCCGGCG ..............((((.((((((....(((((......(((((((...((((........)))).)))))))))))).))))))..)))) (-35.10 = -33.78 + -1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:38 2006