Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,964,178 – 7,964,298 |
Length | 120 |
Max. P | 0.562985 |
Location | 7,964,178 – 7,964,298 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.78 |
Mean single sequence MFE | -36.55 |
Consensus MFE | -24.79 |
Energy contribution | -25.10 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.20 |
Mean z-score | -1.57 |
Structure conservation index | 0.68 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562985 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7964178 120 + 22224390 AGGGAAAACUGGAGCGUUCAGUUAAGCAGCUGGAGGAGCGGGUGGAGAGCAAAGGAAUUGCCGAUUACCUAAAGGCUGUACUCGGCUACAACUAGUGAUUGCGGACGGGAAUCCGCAAUA .......(((((.((.(((((((....)))))))...))((((((.(.((((.....)))))..))))))...(((((....)))))....))))).((((((((......)))))))). ( -37.00) >DroSim_CAF1 14299 114 + 1 AGGGCAAACUGGAGCGUUCAGUUAAGCAGCUGGAGGAGCAGGUGGAGAGCAAAGGAAUUGCCGAUUACCUAAAGGCUGUACUCGGCUACGACUAGUGG------AGUCCCGUCCGCAAUA .((((.(((((((...)))))))..((((((..(((((..((..(....(....)..)..))..)).)))...))))))((((.((((....)))).)------)))...))))...... ( -34.00) >DroEre_CAF1 15216 111 + 1 AGGGGAAGCUGGAGCGUUUGGUUAAACAGCUGGAGGAGCAGGUGGAGAGGAAACGAAUUGCCGAUUACCUAAAGGCUGUAGUGGGCUACCACUAGUGACU-------CCCGUCCAG--UA .......((((((.((...(((((.((((((..(((((..((..(...(....)...)..))..)).)))...))))))(((((....)))))..)))))-------..)))))))--). ( -40.20) >DroYak_CAF1 15525 111 + 1 AGGGGAAACUGGAGCGUUCAGUUAAACAGCUGGAGGAGCAGGUGGAGAGCAAACGAAUUGCUGAUUACCUAAAGGCUGUAGUCGGCUACAACUAGUGAUU-------GCCGUCCGC--UA ((.(((.((((.(((.(((((((....))))))).....((((((..(((((.....)))))..))))))....))).))))(((((((.....)))...-------))))))).)--). ( -35.00) >consensus AGGGGAAACUGGAGCGUUCAGUUAAACAGCUGGAGGAGCAGGUGGAGAGCAAACGAAUUGCCGAUUACCUAAAGGCUGUACUCGGCUACAACUAGUGAUU_______CCCGUCCGC__UA ........(((...(.(((((((....))))))).)..)))(((((..((.........(((((((((.........)))))))))(((.....)))..........))..))))).... (-24.79 = -25.10 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:31 2006