Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,927,574 – 7,927,670 |
Length | 96 |
Max. P | 0.528314 |
Location | 7,927,574 – 7,927,670 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 82.42 |
Mean single sequence MFE | -19.29 |
Consensus MFE | -16.49 |
Energy contribution | -15.94 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.13 |
Mean z-score | -1.15 |
Structure conservation index | 0.85 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528314 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7927574 96 + 22224390 UGGCCUACGGCAAAAAAAAAACAAAAAAAGCUCAGGAAACCAGAACCAAUGUACAAUGUACGCCAAUGAGAGGUAUUAUUUGGUUCAAAGAUUUAG ((((((..(((..................))).)))...)))(((((((.((((...))))(((.......))).....))))))).......... ( -17.07) >DroSec_CAF1 3707 81 + 1 UGGCCCACGACG---------------AAGCUCGGGAAACCAGAACCAAUGUACAAUGUACACCAUUGCGAGGUAUUAUUUGGUUUAAAGAUUUAG (((.((.(((..---------------....)))))...)))(((((((.((((..((((......))))..))))...))))))).......... ( -17.50) >DroSim_CAF1 2857 81 + 1 UGGCCCACGGCG---------------AAGCUCGGGAAGCCAGAACCAAUGUACAAUGUACACCAUUGCGAGGUAUUAUUUGGUUCAAAGAUUUAG ((((((.((((.---------------..)).))))..))))(((((((.((((..((((......))))..))))...))))))).......... ( -23.30) >consensus UGGCCCACGGCG_______________AAGCUCGGGAAACCAGAACCAAUGUACAAUGUACACCAUUGCGAGGUAUUAUUUGGUUCAAAGAUUUAG ((((((..(((..................))).)))...)))(((((((.((((...))))(((.......))).....))))))).......... (-16.49 = -15.94 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:14 2006