Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,900,182 – 7,900,302 |
Length | 120 |
Max. P | 0.513239 |
Location | 7,900,182 – 7,900,302 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.36 |
Mean single sequence MFE | -39.33 |
Consensus MFE | -37.34 |
Energy contribution | -37.65 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -1.52 |
Structure conservation index | 0.95 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513239 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7900182 120 - 22224390 AUGUAGUGGUUAUGGCCCAGACGCUCGAGAAGGUCUUCCUGCAGAAGAUCGAAUCGAUGCCUAAGGAGGAGCUUGAACUGGAGCCGGUCACGGCCAAGGGUGGCAAAAAGAAGCAACGGG .(((.((((...((((((((..((((((...(((((((.....)))))))...)))).)).((((......))))..)))).)))).)))).((((....))))........)))..... ( -39.10) >DroSec_CAF1 806 120 - 1 AUGUAGUUGUUAUGGCCCAGACGCUCGAGAAGGUCUUCCUGCAGAAGAUUGAAUCGAUGCCUAAGGAGGAGCUCGAACUGGAGCCGGUUACGGCCAAGGGUGGCAAAAAGAAGCAACGGG .....((((((.((((((((....(((((....((((((((((...(((...)))..)))...))))))).))))).)))).))))......((((....)))).......))))))... ( -40.60) >DroSim_CAF1 3923 120 - 1 AUGUAGUUGUUAUGGCCCAGACGCUCGAGAAGGUCUUCCUGCAAAAGAUUGAAUCGAUGCCUAAGGAGGAGCUCGAACUGGAGCCGGUUACGGCCAAGGGUGGCAAAAAGAAGCAACGGG .....((((((.((((((((....(((((....((((((((((...(((...)))..)))...))))))).))))).)))).))))......((((....)))).......))))))... ( -39.50) >DroYak_CAF1 3935 120 - 1 AUGUAGUUGUUAUGGCCCAGACGCUCGAGAAGGUCUUCCUGCAGAAGAUCGAAUCGAUGCCUAAGGAGGAGCUCGAACUGGAGCCGGUUACGGCCAAGGGUGGAAAAAAGAAGCAACGGG .....((((((.((((((((....(((((....((((((((((...(((...)))..)))...))))))).))))).)))).))))....(.(((...))).)........))))))... ( -38.10) >consensus AUGUAGUUGUUAUGGCCCAGACGCUCGAGAAGGUCUUCCUGCAGAAGAUCGAAUCGAUGCCUAAGGAGGAGCUCGAACUGGAGCCGGUUACGGCCAAGGGUGGCAAAAAGAAGCAACGGG .....((((((.((((((((....(((((....((((((((((...(((...)))..)))...))))))).))))).)))).))))......((((....)))).......))))))... (-37.34 = -37.65 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:42 2006