Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,899,429 – 7,899,542 |
Length | 113 |
Max. P | 0.709390 |
Location | 7,899,429 – 7,899,542 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 98.08 |
Mean single sequence MFE | -46.50 |
Consensus MFE | -44.65 |
Energy contribution | -44.90 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.80 |
Structure conservation index | 0.96 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709390 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7899429 113 + 22224390 AGGCAUUGGCCGUCGGCGUUGUUGUGUCCGCCUUCCGUUUGACACCCUUCUUUAUUUUGGCGGGCUGCUGAGGCGGUAUCACGGCGUCCACUCCGACGCUCACGCCCGCAUUC ..((...(((.((.(((((((..(((..((((..((((((.((((((.((........)).))).)).).))))))......))))..)))..))))))).))))).)).... ( -43.70) >DroSec_CAF1 62 113 + 1 AGGCAUUGGCCGUCGGCGUUGUUGUGUCCGCCUUCCGUUUGACGCCCUUCUUUAUUUUGGCGGGCUGCUGAGGCGGUAUCACGGCGUCCACUCCGACGCUCACGCCCGCAUUC ..((...(((.((.(((((((..(((..((((..((((((.((((((.((........)).)))).).).))))))......))))..)))..))))))).))))).)).... ( -45.20) >DroSim_CAF1 3173 113 + 1 AGGCAUUGGCCGUCGGCGUUGUUGUGUCCGCCUUCCGUUUGACGCCCUUCUUUAUUUUGGCGGGCUGCUGAGGCGGUAUCACGGCGUCGACUCCGACGCUCACGCCCGCAUUC .(((....)))((.(((((....(((.(((((((..((.....((((.((........)).)))).)).)))))))...)))(((((((....))))))).))))).)).... ( -47.90) >DroYak_CAF1 3185 113 + 1 AGGCAUUGGCCGUCGGCGUGGUUGUGUCCGCCUUCCGUUUGACGCCCUUCUUUAUUUUGGCGGGCUGCUGAGGCGGUAUCACGGCGUCGACUCCGACGCUGACGCCCGCAUUC .(((....)))((.(((((....(((.(((((((..((.....((((.((........)).)))).)).)))))))...)))(((((((....))))))).))))).)).... ( -49.20) >consensus AGGCAUUGGCCGUCGGCGUUGUUGUGUCCGCCUUCCGUUUGACGCCCUUCUUUAUUUUGGCGGGCUGCUGAGGCGGUAUCACGGCGUCCACUCCGACGCUCACGCCCGCAUUC .(((....)))((.(((((....(((.(((((((..((.....((((.((........)).)))).)).)))))))...)))((((((......)))))).))))).)).... (-44.65 = -44.90 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:39 2006