Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,895,743 – 7,895,848 |
Length | 105 |
Max. P | 0.575683 |
Location | 7,895,743 – 7,895,848 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 80.01 |
Mean single sequence MFE | -24.03 |
Consensus MFE | -15.42 |
Energy contribution | -15.40 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.37 |
Mean z-score | -1.43 |
Structure conservation index | 0.64 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575683 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7895743 105 - 22224390 UUGGUUUGAAA--AUCAAUCAAAGUGUGUAAACAAUUUGUC---AUUUUUCCAUCUCGCAGAUAAAAAGCCUUCUGGCAAGUCGAAGGACGAGCAGAUGGCCGAGAAAAA (((((..((((--(.....((((.(((....))).))))..---..)))))(((((.((.........(((....)))..(((....)))..))))))))))))...... ( -28.50) >DroSec_CAF1 6443 102 - 1 UUGGU-UGAAA--GUCAAUCUAAGU--GUAAACAAAAUGUC---GUUUUUCCAUCUCGCAGAUAAAAAGCCUUCUGGCAAGUCGAAGGACGAGCAGAUGGCCGAGAAAAA ..(((-((...--..))))).....--..........(.((---(.....((((((.((.........(((....)))..(((....)))..)))))))).))).).... ( -25.40) >DroSim_CAF1 6346 102 - 1 UUGGU-UGAAA--GUCAAUCUAAGU--GUAAACAAAAUGUC---GUUUUUCCAUCUCGCAGAUAAAAAGCCUUCUGGCAAGUCGAAGGACGAGCAGAUGGCCGAGAAAAA ..(((-((...--..))))).....--..........(.((---(.....((((((.((.........(((....)))..(((....)))..)))))))).))).).... ( -25.40) >DroEre_CAF1 6170 101 - 1 CUCGU-UGAAA--AUCAAUCUGAGU--AUAAACAA-UUGUC---GUUUCUCCGUUUCGCAGAUAAAAAGCCUUCUGGCAAGUCGAAGGAUGAGCAGAUGGCCGAGAAAAA ((((.-.((((--..((((.((...--.....)))-)))..---.)))).((((((.((.........(((....)))..(((....)))..)))))))).))))..... ( -22.60) >DroYak_CAF1 6357 95 - 1 UUAGU-UGAGAAUAUCAAUCUAAGU--AU---------GUC---GCUUUUCCCUCUCGCAGAUAAAAAGCCGUCUGGCAAGUCGAAGGACGAGCAGAUGGCCGAGAAGAA (((((-(((.....)))).))))..--..---------...---....(((..(((((..........((((((((.(..(((....)))..)))))))))))))).))) ( -27.30) >DroMoj_CAF1 12442 94 - 1 UUGGU--CACA--AUUA--CUA-------AAUGAA--UGUUCUCAAUUUU-CGUAUUACAGAUAAAAAGCCUUCCGGUAAAUCUAAGGACGAGCAAAUGGCCGAAAAGAA (((((--((..--....--...-------..(((.--.....)))...((-(((.....((((.....(((....)))..))))....)))))....)))))))...... ( -15.00) >consensus UUGGU_UGAAA__AUCAAUCUAAGU__GUAAACAA__UGUC___GUUUUUCCAUCUCGCAGAUAAAAAGCCUUCUGGCAAGUCGAAGGACGAGCAGAUGGCCGAGAAAAA .............................................(((((((((((.((.........(((....)))..(((....)))..))))))))...))))).. (-15.42 = -15.40 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:29 2006