Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,843,900 – 7,844,015 |
Length | 115 |
Max. P | 0.979041 |
Location | 7,843,900 – 7,844,015 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 65.23 |
Mean single sequence MFE | -31.70 |
Consensus MFE | -15.57 |
Energy contribution | -17.00 |
Covariance contribution | 1.43 |
Combinations/Pair | 1.17 |
Mean z-score | -2.14 |
Structure conservation index | 0.49 |
SVM decision value | 1.83 |
SVM RNA-class probability | 0.979041 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7843900 115 + 22224390 ---GUGGCAUGUCGUAAAACGAGGCGUGGCUGCAAAGUACGCGGCCACGAAAAUUUCCAAAAAAAAAUUUUUAAUGCACACAGGCAC-GUGAAAAUUGCCCAGCGGCCAUUAGAACAUC ---(((((.(((((.....)))(((((((((((.......)))))))).................((((((((.(((......))).-.)))))))))))))...)))))......... ( -34.80) >DroYak_CAF1 24602 110 + 1 ---GUGGCAAGUCGUAAAAUGAGGCGGUGCUGCAAAGUACGCCGCCACGUGAAUUUACAA-----AAUUUUUAAUGCACGCAGUGCC-GUGAAAAUCGCCCAGCGGCCAUUAGAACAUC ---(((((...((((...))))((((.((((....)))))))))))))............-----...((((((((..(((.(.((.-((....)).)).).)))..)))))))).... ( -33.80) >DroAna_CAF1 15398 98 + 1 AAUGUGGCAAGUCGUAAAACGGGGCGAUGCUAAAAAGUAUGCCCCCACCAAAGUCUGG-------UAUUUUAAAUACAGUCAGUGUUCCUGG-----------C-ACCAAUAAAAGG-- ....(((......(((....(((((.(((((....)))))))))).((((.....)))-------)........))).(((((.....))))-----------)-.)))........-- ( -26.50) >consensus ___GUGGCAAGUCGUAAAACGAGGCGAUGCUGCAAAGUACGCCGCCACGAAAAUUUACAA_____AAUUUUUAAUGCACACAGUGAC_GUGAAAAU_GCCCAGCGGCCAUUAGAACAUC ...(((((...(((.....)))((((.((((....)))))))))))))....................(((((((((((.........)))......(((....))))))))))).... (-15.57 = -17.00 + 1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:59 2006