Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,834,268 – 7,834,364 |
Length | 96 |
Max. P | 0.702113 |
Location | 7,834,268 – 7,834,364 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 74.43 |
Mean single sequence MFE | -22.28 |
Consensus MFE | -11.79 |
Energy contribution | -12.85 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.16 |
Mean z-score | -1.95 |
Structure conservation index | 0.53 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.702113 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7834268 96 - 22224390 AGCUAUGCACUAUGGGGCCAACUAACACUAUAGUUGGCCAAAAA--GGAUAAUUUAA-AGUCAUCGAGAUGAAAUGAGA---------------UGUGCUAGGAAAAUAAUAUC ..(((.((((.....(((((((((......))))))))).....--.....((((..-..((((....))))....)))---------------))))))))............ ( -25.90) >DroSec_CAF1 10187 101 - 1 AGCUAUGCACUAUGGGGCCAAGGAGCACUUAUGUUGGCCAAAAA--GAAUAAUUUAA-AGUCAUCGAGAUGAAAUGAGA------UGAG----AUGUGCUAGAAAAAUAAUAUC ..(((.((((.....((((((.(........).)))))).....--...........-..(((((............))------))).----..)))))))............ ( -20.60) >DroSim_CAF1 15521 105 - 1 AGCUAUGCACUAUGGGGUCAACGGGCACUUAUAUUGGCCAAAAA--AAAUUAUUUCU-UUGCAUCGAGAUGAAAUAAGA------UGAUACAUAUGUGCUAGAAAAAUAAUAUC ..(((.((((((((..((((.(.(((.(.......)))).....--...(((((((.-.......))))))).....).------)))).)))).)))))))............ ( -22.50) >DroEre_CAF1 17996 114 - 1 AGCAAUGCACUAUGGAGCCAACGAACACUUAUGUUGUCCAUAAUUCGCUCAAUUUAAUAGUUAUCAAGAUGAAAUUUGACCCAUCUUUUACUUGUGUGAUAGCAUAAUAAUAUC ....((((..((((((..(((((........)))))))))))..((((.((.......(((....((((((..........))))))..))))).))))..))))......... ( -20.11) >consensus AGCUAUGCACUAUGGGGCCAACGAACACUUAUGUUGGCCAAAAA__GAAUAAUUUAA_AGUCAUCGAGAUGAAAUGAGA______UGAU____AUGUGCUAGAAAAAUAAUAUC ..(((.((((.....((((((((........)))))))).....................((((....)))).......................)))))))............ (-11.79 = -12.85 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:47 2006