Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,814,833 – 7,814,935 |
Length | 102 |
Max. P | 0.910347 |
Location | 7,814,833 – 7,814,935 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 88.07 |
Mean single sequence MFE | -37.49 |
Consensus MFE | -32.40 |
Energy contribution | -33.52 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.17 |
Mean z-score | -1.93 |
Structure conservation index | 0.86 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910347 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7814833 102 + 22224390 CAGACGGCUGUGCUAACAGAGCGCUGCUAUGGUGAGAAGCCGCCGCAAUGGCAACAGUGCCAUCUCUGGCCGGCGAUACAAAUAGCGCAACUUCGCUCGCAA ..(((((((.((....)).)))((.(((((..((....(((((((..((((((....))))))...))).))))....)).))))))).....)).)).... ( -34.40) >DroSec_CAF1 17414 102 + 1 CAGACGGCUGUGCUAACAGAGCUCGUCUAUGGUGAGAAACCGCUGCAAUGGCAACAGUGCCAUCUCUGGCGGGCGAUACAAAUAGCGCAACUUCGCUCGCAA .((((((((.((....)).))).)))))...(((((...((((((..((((((....))))))..).)))))(((..........))).......))))).. ( -37.50) >DroEre_CAF1 18452 102 + 1 UAAACGGCAGUGCUAGCAUAGCUCUGCUAUGGCGAGAAACCGCCGCGAUGAUAACAGUGGCAUCUCUGGCGGGCGAUACAAAUAGCGCGGCUUUGCUCGCAA ..........(((.((((.((((.((((((.........((((((.((((..........))))..)))))).........)))))).)))).)))).))). ( -36.07) >DroYak_CAF1 18470 102 + 1 UAAACGGCAGUGCUAACAGAGCGCUGCUAUGGCGAGAAAUCGCCGCGAUGGUAACAGUGGCAUCUCUGGCGGGCGAUACAAAUAGCGCGGCUACGCUCGCAA .....(((((((((.....)))))))))..(((((....)))))..((((.((....)).))))....(((((((.......((((...))))))))))).. ( -42.01) >consensus CAAACGGCAGUGCUAACAGAGCGCUGCUAUGGCGAGAAACCGCCGCAAUGGCAACAGUGCCAUCUCUGGCGGGCGAUACAAAUAGCGCAACUUCGCUCGCAA .....(((((((((.....)))))))))...(((((...((((((.(((((((....))))))).).)))))(((..........))).......))))).. (-32.40 = -33.52 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:37 2006