Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,809,201 – 7,809,292 |
Length | 91 |
Max. P | 0.689001 |
Location | 7,809,201 – 7,809,292 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 82.56 |
Mean single sequence MFE | -28.33 |
Consensus MFE | -19.58 |
Energy contribution | -20.50 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.27 |
Mean z-score | -1.96 |
Structure conservation index | 0.69 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.689001 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7809201 91 - 22224390 CACCGCUUUGCGCAACUACCUCGGUCUAAAUGCCGAACUGGUGCAGAAUCACAUGCGCUACAAGAGCGUAUCCACAAUGAGUGGACCGAUU ......(((((((.......(((((......)))))....)))))))(((...((((((.....))))))(((((.....)))))..))). ( -27.00) >DroSim_CAF1 12471 91 - 1 CACCGCUCUGCGCAACUACCUCGGUCUGAAUGCCGAACUGGUGCAGAAUCACAUGCGCUACAAGAGCGUAUCCACAAUGAGUGGACCGAUC ......(((((((.......(((((......)))))....)))))))(((...((((((.....))))))(((((.....)))))..))). ( -29.60) >DroEre_CAF1 12696 91 - 1 CACCGCUCUGCGCAACUAUCUCGGCCUGAAUGCCGAGCUGGUGCAGAAUCACAUGCGCUACAAGAGCGUAUCCACAAUGAGUGGACCGAUC ......(((((((......((((((......))))))...)))))))(((...((((((.....))))))(((((.....)))))..))). ( -34.30) >DroWil_CAF1 9836 88 - 1 UACCGCUCUCCGCAAUUAUCUUGGCCUUAAUGCUGAGCUUGUCCAGAAUCAUAUGCGCAAUAAGAGCAUA---ACAAUUUCCGGACAUCUC ....((((...(((.(((.........)))))).)))).(((((.(((...(((((.(.....).)))))---.....))).))))).... ( -20.20) >DroYak_CAF1 12916 91 - 1 CACCGCACUGCGCAACUACCUCGGUCUGAAUGCCGAAUUGGUGCAGAAUCACAUGCGCUACAAGAGCGUAUCCACAAUGAGUGGACCGAUC .......((((((.......(((((......)))))....)))))).(((...((((((.....))))))(((((.....)))))..))). ( -28.40) >DroAna_CAF1 13807 88 - 1 CACCGCUCUGAGGAACUACCUCGGCCUGAACGCCGAGCUGGUGCAGAAUCACAUGCGUUUCAAGAGCAGCACCAUAAUG---GCGCCGUCC ....(((((((((.((((.((((((......)))))).))))(((........))).)))).))))).((.((.....)---).))..... ( -30.50) >consensus CACCGCUCUGCGCAACUACCUCGGCCUGAAUGCCGAACUGGUGCAGAAUCACAUGCGCUACAAGAGCGUAUCCACAAUGAGUGGACCGAUC ....(((((...........(((((......)))))..(((((((........)))))))..)))))...(((((.....)))))...... (-19.58 = -20.50 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:35 2006