Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,779,803 – 7,779,923 |
Length | 120 |
Max. P | 0.941222 |
Location | 7,779,803 – 7,779,923 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.83 |
Mean single sequence MFE | -35.55 |
Consensus MFE | -30.75 |
Energy contribution | -31.12 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.06 |
Mean z-score | -3.07 |
Structure conservation index | 0.86 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941222 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7779803 120 + 22224390 AGUAGUCUAUGUUUGCGGUCGAAAUACAAUACUGCAUUUGUGUAUGCGAUAAGAAAGCUUUUCUGUUCGUGUGCAUAGGUGCACUGUAAUAAACCAGGAAAAUACGAUGUAAAUGACUAC .((((((...(((((((.(((...........(((((((((((((((((..((((.....))))..)))))))))))))))))(((........))).......)))))))))))))))) ( -39.90) >DroSim_CAF1 77 120 + 1 AGGAGUCUCUGUUUGCGGUCGAAAUACAAUACUGCAUUUGUGUAUGCGAUACGAAAGAUUUUCUGUUUGUGUGCAUAGGUGCACUGUAAUAAACCAGGAAAAUACGAUGUAAAUGACUAC ...((((...(((((((.(((...........(((((((((((((((((...(((.....)))...)))))))))))))))))(((........))).......)))))))))))))).. ( -33.00) >DroEre_CAF1 1022 120 + 1 AGGAGUCCCUGUUUGUGGUCGAAAUACAAUACUGCAUUUGUGUAUGCGAUAAGAAAGCUAUUCUGUUUGUGUGCAUAGGUGCACUGUAAUAAACCAGGAAAAUACGAUGUAAAUGACUAC (((....)))....(((((((...((((....(((((((((((((((((..((((.....))))..)))))))))))))))))(((........)))..........))))..))))))) ( -34.30) >DroYak_CAF1 422 120 + 1 AGGAGUCCCUGUUUGUGGUCAAAAUACAAUACUGCAUUUGUGUAUGCGAUAAGAAAGCUAUUCUGUUUGUGUGCAUAGGUGCACUGUAAUAAACCAGGAAAAUACGAUGUAAAUGACUAC (((....)))....(((((((...((((....(((((((((((((((((..((((.....))))..)))))))))))))))))(((........)))..........))))..))))))) ( -35.00) >consensus AGGAGUCCCUGUUUGCGGUCGAAAUACAAUACUGCAUUUGUGUAUGCGAUAAGAAAGCUAUUCUGUUUGUGUGCAUAGGUGCACUGUAAUAAACCAGGAAAAUACGAUGUAAAUGACUAC ..............(((((((...((((....(((((((((((((((((..((((.....))))..)))))))))))))))))(((........)))..........))))..))))))) (-30.75 = -31.12 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:22 2006