Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,765,421 – 7,765,523 |
Length | 102 |
Max. P | 0.948414 |
Location | 7,765,421 – 7,765,523 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 74.04 |
Mean single sequence MFE | -27.34 |
Consensus MFE | -13.20 |
Energy contribution | -13.32 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.27 |
Mean z-score | -2.11 |
Structure conservation index | 0.48 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948414 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7765421 102 - 22224390 GUUGUUAGCAAUACUUUC-UGUUACUAACUGAAUCUACGGCCAU------UUG------UGGUGUACCAUCACUACAAACAUCGAUAACUACUAAUCGGCGGUAACGGCAAUGUA (((((((.(......(((-.((.....)).)))......(((.(------(((------(((((......)))))))))....(((........))))))).)))))))...... ( -25.10) >DroSec_CAF1 14590 102 - 1 GUUGUUAGCAAUACGUUC-UGUUACGAACUGAAACUACCGCCAU------UUG------UGGUGUGUCAUCACUACAAACAUCGAUAACUACUAAUCGGCGGUAACGACAAUGUA ((((((........((((-......)))).......((((((.(------(((------(((((......)))))))))....(((........)))))))))))))))...... ( -31.20) >DroSim_CAF1 14131 102 - 1 GUUGUUAGCAAUACGUUC-UGUUACGAACUGAAACUACCGCCAU------UUG------UGGUGUGUCAUCACUACAAACAUCGAUAACUACUAAUCGGCGGUAACGACAAUGUA ((((((........((((-......)))).......((((((.(------(((------(((((......)))))))))....(((........)))))))))))))))...... ( -31.20) >DroEre_CAF1 15028 107 - 1 UUUAACAUUGUUAGCCCCUUGUUCGAAACUAAAACUACCGCUAU------CCGCUAUC--AGUGUGCCAUCACUGAAAACUUCGAUAACCACUAAUCGGCGGUAACGGCAAUAUA .............(((....((.....))......((((((...------......((--((((......))))))......((((........))))))))))..)))...... ( -22.60) >DroYak_CAF1 14851 109 - 1 UUUGGCAACAAUACGUACUCGCUAAAA------AUGGUCGCUAUUUGUGUGCGCGAUUGUGGUGUGCCAUCACUGCGAACUUCGAUAACUACUAAUCGGCGCUAACGGCAAUGUA .(((....)))(((((..((((.....------(((((((((((((((....))))..)))))).)))))....))))....((((........))))((.(....))).))))) ( -26.60) >consensus GUUGUUAGCAAUACGUUC_UGUUACAAACUGAAACUACCGCCAU______UUG______UGGUGUGCCAUCACUACAAACAUCGAUAACUACUAAUCGGCGGUAACGGCAAUGUA ...................................(((((((.................(((((......)))))........(((........))))))))))........... (-13.20 = -13.32 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:06 2006