Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,738,977 – 7,739,080 |
Length | 103 |
Max. P | 0.653803 |
Location | 7,738,977 – 7,739,080 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 85.14 |
Mean single sequence MFE | -30.35 |
Consensus MFE | -19.88 |
Energy contribution | -19.12 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.19 |
Mean z-score | -1.83 |
Structure conservation index | 0.65 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653803 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7738977 103 + 22224390 CAACUUACUUAUAGCAUCGAUAGCACCAGGGCUGUCGAGUCGUUUUUAGUUUAAUAAAAUUUUGGCAGUAA----------GACUAUCGCCGACAGGGAUGCCACUCAGCUUA ...((((((.......((((((((......))))))))((((.(((((......)))))...)))))))))----------)..((((.((....))))))............ ( -25.50) >DroSim_CAF1 18 103 + 1 CAACUUACUUAUAGCAUCGAUAGCACCAGGGCUGUCGAGUCGUUUUUAGUUUAAUAAAAUUUUGACAGUAA----------GACUAUCGCCGACAGGGAUGCCACUCAGUUUA ...((((((.......((((((((......))))))))((((.(((((......)))))...)))))))))----------)..((((.((....))))))............ ( -26.10) >DroEre_CAF1 2145 111 + 1 CAACUUACUUAUAGCAUCGAUAGCGCCAGGGCUGUCGAGUUGUUUUUAGUUAAAUGAAAU--UGACUGUAAUAUGGCUAUCGCCUAUCGUCGACAGGGAUGCCACUCAGUCCA .((((.....(((((.((((((((......)))))))))))))....)))).........--.(((((.....((((.(((.(((.((...)).))))))))))..))))).. ( -34.30) >DroYak_CAF1 2190 111 + 1 UAACUUACUUAUAGCAUCGAUAGCACCAGGGCUGUCGAGUCGUUUUUAGUUCAAUGAAGU--UGACAGUAAAAUGGCUAUCGACUAUCGCCGGCAGGGCUGCCACUCAGUCCA ..........((((..((((((((......((((((((.(((((........)))))..)--)))))))......))))))))))))........((((((.....)))))). ( -35.50) >consensus CAACUUACUUAUAGCAUCGAUAGCACCAGGGCUGUCGAGUCGUUUUUAGUUUAAUAAAAU__UGACAGUAA__________GACUAUCGCCGACAGGGAUGCCACUCAGUCCA ....((((........((((((((......))))))))((((.(((((......)))))...)))).)))).............((((.((....))))))............ (-19.88 = -19.12 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:54 2006