Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,719,262 – 7,719,360 |
Length | 98 |
Max. P | 0.654988 |
Location | 7,719,262 – 7,719,360 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 89.73 |
Mean single sequence MFE | -25.22 |
Consensus MFE | -21.54 |
Energy contribution | -21.72 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.13 |
Mean z-score | -1.50 |
Structure conservation index | 0.85 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654988 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7719262 98 - 22224390 UAUUAAGAUUUUAAUUCAAUGAGUUUUUUCU-UAGGCAGCUUACGCAUUUCAGUCGCCGGAAUCGUGAUUAAAUGUGAGAUAGCUGCGGCUCAUGAGUA .............(((((.((((((......-...((((((..(((((((.((((((.......)))))))))))))....))))))))))))))))). ( -28.40) >DroSec_CAF1 3979 99 - 1 UUUUAAGAUUUUAAUUCAAUGAGUUUUUUCUUUAGGCGGCUUACGCAUUUCAGUCGCCGGAAUCGUGAUUAAAUGUGAGAUAGCUGUGGCUCAUGAGUA .............(((((.((((((..........((((((..(((((((.((((((.......)))))))))))))....))))))))))))))))). ( -26.20) >DroSim_CAF1 2356 99 - 1 CUUUAAGAUUUUAAUUCAAUGAGUUUUUUCUUUAGGCGGCUUACGCAUUUCGGUCGCCGGAAUCGUGAUUAAAUGUGAGAUAGCUGUGGCUCAUGAGUA .............(((((.((((((..........((((((..(((((((.((((((.......)))))))))))))....))))))))))))))))). ( -25.80) >DroYak_CAF1 4622 95 - 1 --UUGGGAUUUUUAUUUAAUGAGUUUUUA--GUAGGCGGCUUACGCAUUUCAGUCGCCGGAAUCGUGCUUAAAUGUGAGUUAUCUCCGGGUCAUGAGUA --(((((((.(((((....(((((.....--...(((((((..........)))))))........)))))...)))))..))).)))).......... ( -20.49) >consensus UUUUAAGAUUUUAAUUCAAUGAGUUUUUUCUUUAGGCGGCUUACGCAUUUCAGUCGCCGGAAUCGUGAUUAAAUGUGAGAUAGCUGCGGCUCAUGAGUA .............(((((.((((((..........((((((..(((((((.((((((.......)))))))))))))....))))))))))))))))). (-21.54 = -21.72 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:51 2006