Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,708,036 – 7,708,156 |
Length | 120 |
Max. P | 0.500000 |
Location | 7,708,036 – 7,708,156 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.28 |
Mean single sequence MFE | -39.33 |
Consensus MFE | -35.17 |
Energy contribution | -35.40 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.05 |
Mean z-score | -1.70 |
Structure conservation index | 0.89 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7708036 120 + 22224390 AGGCCGCAGGUUGCACCAUAAUUGUGUUGAUUAGCUAAUUAGAUGUAAUUUCACGGCCGGAAAUUGGCAGUUGCUGCAGUCGGGCAGCCAUUAGGAGGACAAUUUCUAGACCAGAUCCGC .(((((.((((((((...((((((.((......))))))))..))))))))..)))))(((..((((.....(((((......)))))..(((((((.....))))))).)))).))).. ( -36.10) >DroSim_CAF1 15905 120 + 1 AGGCCGCAGGUUGCACCAUAAUUGUGUUGAUUAGCUAAUUAGAUGUAAUUUCGCGGCCGGAAAUUGGCAGUUGCUGCAGUCGGGCAGCCAUUAGUAGGACUAUUUCUAGACCAGAUCUGC .((((((((((((((...((((((.((......))))))))..)))))))).))))))........((((..(((((......)))))........((.(((....))).))....)))) ( -37.60) >DroEre_CAF1 5666 120 + 1 AGGCCGCAGGUUGCACCAUAAUUGCGUUGAUUAGGUAAUUAGAUGUAAUUUCGCGGCCGGAAAUUGGCAGUUGCUGCAGUCGGGCAGCCAUUAGAAGGACAAUUCCUAGACCAGAUCCAC .((((((((((((((...(((((((.(.....).)))))))..)))))))).))))))(((..((((((((.(((((......))))).)))...((((....)))).).)))).))).. ( -44.30) >consensus AGGCCGCAGGUUGCACCAUAAUUGUGUUGAUUAGCUAAUUAGAUGUAAUUUCGCGGCCGGAAAUUGGCAGUUGCUGCAGUCGGGCAGCCAUUAGAAGGACAAUUUCUAGACCAGAUCCGC .((((((((((((((...((((((.((......))))))))..)))))))).))))))(((..((((((((.(((((......))))).)))...((((....)))).).)))).))).. (-35.17 = -35.40 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:47 2006