Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,703,451 – 7,703,561 |
Length | 110 |
Max. P | 0.968239 |
Location | 7,703,451 – 7,703,561 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.06 |
Mean single sequence MFE | -37.87 |
Consensus MFE | -25.77 |
Energy contribution | -27.64 |
Covariance contribution | 1.87 |
Combinations/Pair | 1.22 |
Mean z-score | -1.96 |
Structure conservation index | 0.68 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.968239 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7703451 110 - 22224390 CUCGAAGGCCUGCAGCUCCUGGCGCAUCGUCUUUACCAGCGCCCGGCCAACCAGCUGGGCACCCAAAAUGAUGAUUUGCGCUAAGUACCGUGCCAUUUUCUGCUUGUCUA---------- .....((((..((((....((((((((((((.......(.(((((((......))))))).).......)))))).(((.....)))..))))))....))))..)))).---------- ( -40.44) >DroSec_CAF1 1362 110 - 1 CUCGAAGGCCUGCAGCUCCUGGCGCAUCGUUUUUACCAGCGCCCGGCCAACCAGCUGGGCACCCAAAAUGAUGAUCUGUGCCAGGUAUCGUGCCAUUUUCUGCUUGUCUA---------- .....((((..((((..((((((((((((((.......(.(((((((......))))))).).......)))))..)))))))))..............))))..)))).---------- ( -41.33) >DroMoj_CAF1 20967 120 - 1 UCGCGAUGCGUCGAUUUCCUGACGCACCGCCUUCACGAAGGCGCGACCCACCGAUUGGGCGCCAUAAACAAGGAUCUUUGCAAAAUGCUUGGCCAUUUGCUCCCACUCCGUCUCGCCCCC ..(((((((((((......)))))))..(((((....)))))(((.((((.....))))))).........(((.....(((((..((...))..)))))......)))...)))).... ( -37.30) >DroSim_CAF1 9526 110 - 1 CUCGAAGGCCUGCAGCUCCUGGCGCAUCGUCUUUACCAGCGCCCGGCCAACCAGCUGGGCACCCAAAAUGAUGAUCUGUGCUAGGUAUCGUGCCAUUUUCUGCUUGUCUA---------- .....((((..((((..((((((((((((((.......(.(((((((......))))))).).......)))))..)))))))))..............))))..)))).---------- ( -40.83) >DroEre_CAF1 2 95 - 1 CUCGAAGGCCUGCAGCUCCUGCCGCAUCGUCUUAACCAGCGCCCGCCCAACCGCCUGGGCACCCAAGAUGAUGAUCUGUGCUAGGUAGCGUGCCA------------------------- ......(((..((.(((((((((.(((((((((.....(.((((((......))..)))).)..)))))))))....).)).))).)))))))).------------------------- ( -30.80) >DroYak_CAF1 2280 110 - 1 CUCGAAGGCCUGCAGCUCCUGGCGCAUCGUCUUCACCAGCGCCCGUCCAACCAGCUGGGCACCCAAAAUGAUGAUCUGUGCCAGGUACCGUGCCAUUUUCUGCUUGUCUA---------- .....((((..((((..((((((((((((((.......(.(((((.(......).))))).).......)))))..)))))))))..............))))..)))).---------- ( -36.53) >consensus CUCGAAGGCCUGCAGCUCCUGGCGCAUCGUCUUUACCAGCGCCCGGCCAACCAGCUGGGCACCCAAAAUGAUGAUCUGUGCUAGGUACCGUGCCAUUUUCUGCUUGUCUA__________ ......(((..((....((((((((((((((.......(.(((((((......))))))).).......)))))..)))))))))....))))).......................... (-25.77 = -27.64 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:42 2006