Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,702,523 – 7,702,614 |
Length | 91 |
Max. P | 0.949588 |
Location | 7,702,523 – 7,702,614 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 96.34 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -22.90 |
Energy contribution | -22.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.38 |
Structure conservation index | 0.96 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7702523 91 + 22224390 UAAGCACGCACGCACACAGCUGCAAAAACGCCUGCAGAACGGAUACGGAAGCUGGAAAUCAGAGCACGGAAACGUUUUGAUUUCAUUCAGC ...((......))...((((((((........)))....((....))..)))))(((((((((..(((....))))))))))))....... ( -25.90) >DroSec_CAF1 559 91 + 1 CAAGCACACACGCACACAGCUACAAAAACGCCUGCAAAACGGAUACGGAAGCUGGAAAUCAGAGCAAGGAAACGUUUUGAUUUCAUUCAGC ...((......))...(((((.(.......((........)).....).)))))(((((((((((..(....))))))))))))....... ( -22.90) >DroSim_CAF1 8675 91 + 1 CAAGCACACACGCACACAGCUACAAAAACGCCUGCAAAACGGAUACGGAAGCUGGAAAUCAGAGCAAGGAAACGUUUUGAUUUCAUUCAGC ...((......))...(((((.(.......((........)).....).)))))(((((((((((..(....))))))))))))....... ( -22.90) >consensus CAAGCACACACGCACACAGCUACAAAAACGCCUGCAAAACGGAUACGGAAGCUGGAAAUCAGAGCAAGGAAACGUUUUGAUUUCAUUCAGC ...((......))...(((((.(.......((........)).....).)))))(((((((((((..(....))))))))))))....... (-22.90 = -22.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:39 2006