Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,700,600 – 7,700,710 |
Length | 110 |
Max. P | 0.999910 |
Location | 7,700,600 – 7,700,710 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 62.57 |
Mean single sequence MFE | -32.63 |
Consensus MFE | -17.80 |
Energy contribution | -18.47 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.10 |
Mean z-score | -2.10 |
Structure conservation index | 0.55 |
SVM decision value | 3.29 |
SVM RNA-class probability | 0.998939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7700600 110 + 22224390 CACAUCCACACACUGGCACGAUUAUUGCACAUCACUAAUUAGUGAUGUGUGCGACGCA-UCGCGCCUAAAAUUUCUG----ACCACCAAAAGG--GGGAGGUGGACGUCAG---UGGGCG ....(((((.....(((.........((((((((((....))))))))))((((....-)))))))...........----.(((((......--....)))))......)---)))).. ( -38.00) >DroMoj_CAF1 16840 105 + 1 ---------------GCACGAUUAUUGCACAUCACUAAUUAGUGAUGUGAAUUCCGCGCGCGCGCUUAAAUUUUACGUUUCGGCACGAAUAGAUUGGCGAGUGGGGAACAGAGAUAGAUG ---------------......(((((.(((((((((....)))))))))..((((.(((.((((((.((((.....)))).))).(((.....)))))).))).))))....)))))... ( -31.50) >DroSim_CAF1 6766 92 + 1 CACAUCCACACACUGGCACGAUUAUUGCACAUCACUAAUUAGUGAUGUGUGCGACGCA-UCGCGCCUAAAAUUUCUG----ACCACCAAA-GG--GGGAG-------------------- ....(((.......(((.........((((((((((....))))))))))((((....-)))))))...........----.((......-))--.))).-------------------- ( -28.40) >consensus CACAUCCACACACUGGCACGAUUAUUGCACAUCACUAAUUAGUGAUGUGUGCGACGCA_UCGCGCCUAAAAUUUCUG____ACCACCAAAAGG__GGGAGGUGG____CAG___U_G__G ..............(((........(((((((((((....)))))))))))....((....)))))................((.((....))...))...................... (-17.80 = -18.47 + 0.67)
Location | 7,700,600 – 7,700,710 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 62.57 |
Mean single sequence MFE | -32.20 |
Consensus MFE | -20.19 |
Energy contribution | -20.86 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.07 |
Structure conservation index | 0.63 |
SVM decision value | 4.50 |
SVM RNA-class probability | 0.999910 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7700600 110 - 22224390 CGCCCA---CUGACGUCCACCUCCC--CCUUUUGGUGGU----CAGAAAUUUUAGGCGCGA-UGCGUCGCACACAUCACUAAUUAGUGAUGUGCAAUAAUCGUGCCAGUGUGUGGAUGUG (((.((---((...(.(((((....--......))))).----)..........(((((((-(..((.(((((..(((((....)))))))))).)).)))))))))))).)))...... ( -42.40) >DroMoj_CAF1 16840 105 - 1 CAUCUAUCUCUGUUCCCCACUCGCCAAUCUAUUCGUGCCGAAACGUAAAAUUUAAGCGCGCGCGCGGAAUUCACAUCACUAAUUAGUGAUGUGCAAUAAUCGUGC--------------- .................(((...........(((((((((...(((.........))))).)))))))((((((((((((....))))))))).)))....))).--------------- ( -25.00) >DroSim_CAF1 6766 92 - 1 --------------------CUCCC--CC-UUUGGUGGU----CAGAAAUUUUAGGCGCGA-UGCGUCGCACACAUCACUAAUUAGUGAUGUGCAAUAAUCGUGCCAGUGUGUGGAUGUG --------------------.(((.--((-......)).----...........(((((((-(..((.(((((..(((((....)))))))))).)).)))))))).......))).... ( -29.20) >consensus C__C_A___CUG____CCACCUCCC__CCUUUUGGUGGU____CAGAAAUUUUAGGCGCGA_UGCGUCGCACACAUCACUAAUUAGUGAUGUGCAAUAAUCGUGCCAGUGUGUGGAUGUG ......................................................(((((((..........(((((((((....)))))))))......))))))).............. (-20.19 = -20.86 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:37 2006