Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,560,161 – 7,560,273 |
Length | 112 |
Max. P | 0.929403 |
Location | 7,560,161 – 7,560,273 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.50 |
Mean single sequence MFE | -30.32 |
Consensus MFE | -8.96 |
Energy contribution | -10.04 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.12 |
Mean z-score | -2.09 |
Structure conservation index | 0.30 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7560161 112 - 22224390 CUAUGCAAAUUU-CAUUUGUU---UUUUGGGUGCUGGGCACAGAUGUUGGCUUAAUAAAGUUAUAAUAAAGGUAGCUUAGCUGACGGCA----GCUGUGGAACAAUGGAUUUGAUGCACA ...((((...((-((((.(((---(..(((.(((((....)....((..(((.....(((((((.......))))))))))..))))))----.)))..)))))))))).....)))).. ( -29.00) >DroPse_CAF1 117146 103 - 1 CUAUGCAAAUUUUCAAAUGCUCC----------CCUUGCACAGAUGUUGGCUUAAUAAAGUUAUAACAAAGGUGU-------UCCGGCACCCAUCUAGGGGACAAUGGAAAUGAUGGACA ((((....(((((((..((.(((----------(((.....(((((.((((((....)))))).......(((((-------....)))))))))))))))))).))))))).))))... ( -27.80) >DroSec_CAF1 52587 111 - 1 CUAUGCAAAUUU-CAUUUGUU---U-UUGGGUGCUGGCCACAGAUGUUGGCUUAAUAAAGUUAUAAUAAAGGUAGCUUAGCUGACGGCA----GCUGUGGUACAAUGGAUUUGAUGCACA (((.((((((..-.)))))).---.-.)))((((..(((((((.(((..(((.....(((((((.......))))))))))..)))...----.))))))).(((.....)))..)))). ( -33.30) >DroEre_CAF1 64162 115 - 1 CUAUGCAAAUUU-CGUUUGUUGUGUUUUGGGGACUGGGCACAGAUGCUGGCUUAAUAAAGUUAUAAUAAAGGUAGCUUAGCUGACGGCA----GCUGUGCAACAUUGGAUUUGAUGCACA ....((((((..-.))))))(((((.(..((..(...((((((.((((((((.....(((((((.......))))))))))...)))))----.))))))......)..))..).))))) ( -31.30) >DroYak_CAF1 54240 94 - 1 CUAUGCAAAUUU-CAC---------------------ACACAGCUGUUGGCUUAAUAAAGUUAUAAUAAAGGUAGCUUAGCUGACGGCA----GAUGUGGCAGCAUGGAGUUGUUGCACA ............-..(---------------------((((.(((((..(((.....(((((((.......))))))))))..))))).----).))))((((((......))))))... ( -30.20) >consensus CUAUGCAAAUUU_CAUUUGUU___U_UUGGG__CUGGGCACAGAUGUUGGCUUAAUAAAGUUAUAAUAAAGGUAGCUUAGCUGACGGCA____GCUGUGGAACAAUGGAUUUGAUGCACA ......................................(((((.(((((........(((((((.......)))))))......))))).....)))))..................... ( -8.96 = -10.04 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:39 2006