Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,502,732 – 7,502,830 |
Length | 98 |
Max. P | 0.522862 |
Location | 7,502,732 – 7,502,830 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 92.83 |
Mean single sequence MFE | -22.87 |
Consensus MFE | -19.59 |
Energy contribution | -19.37 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.84 |
Structure conservation index | 0.86 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522862 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7502732 98 + 22224390 UAUAGAGACAGCAGACUGAGGCAUAACCUUAAUUCCUUUUGGCAUUUUAUGCUUCCUUCUGUCGCACUGAGAAAAAAUUGCUUUCAUUUGACUUUUGA ....((((..(((((..(((((((((....(((.((....)).))))))))))))..))))).(((.(........).)))))))............. ( -19.90) >DroSim_CAF1 3486 97 + 1 UAUAGAGACAGCAGACUGAGGCAUAACCUUAAUUCCUUUUGGCAUUUUAUGCUUCCUUCUGUCGCACUGA-AAAAAAUAGAGCUCAUUUGACUUUUAA ..(((.(.(.(((((..(((((((((....(((.((....)).))))))))))))..))))).)).))).-......(((((.((....)).))))). ( -20.30) >DroEre_CAF1 4283 97 + 1 UAUAGCGACAGCAGACUGAGGCAUAACCUUAAUUCCUUUUGGCAUUUUAUGCUUCCUUCUGUCGCACUAA-GAAAAAUGGCGUUCAUUUGACUUUGGA ....(((((((.((...(((((((((....(((.((....)).)))))))))))))).))))))).((((-(..(((((.....)))))...))))). ( -28.40) >consensus UAUAGAGACAGCAGACUGAGGCAUAACCUUAAUUCCUUUUGGCAUUUUAUGCUUCCUUCUGUCGCACUGA_AAAAAAUAGCGUUCAUUUGACUUUUGA ..(((.(.(.(((((..(((((((((....(((.((....)).))))))))))))..))))).)).)))............................. (-19.59 = -19.37 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:04 2006