Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,487,519 – 7,487,635 |
Length | 116 |
Max. P | 0.993775 |
Location | 7,487,519 – 7,487,635 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.79 |
Mean single sequence MFE | -41.00 |
Consensus MFE | -35.50 |
Energy contribution | -35.34 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.15 |
Mean z-score | -2.09 |
Structure conservation index | 0.87 |
SVM decision value | 2.42 |
SVM RNA-class probability | 0.993775 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7487519 116 + 22224390 AGCAUUUUCCCCAUGGCA-GCCUGUCAUGUCAUGUAGGCGUUUAAGUGGCAGUCAUGGGUUAAGGGAGGGACUU-UCAAGAGUCCUUCGACUUU-UGCAGCUAACUAGGGAGUAAGGUA- .((((((..((((((((.-(((((.(((...))))))))(((.....))).))))))))..))).(((((((((-....)))))))))......-)))..((.(((....))).))...- ( -40.30) >DroSec_CAF1 20546 116 + 1 AGCAUUUUCCCCAUGACA-GCCUGUCAUGUCAUGUAGGCGUUUAAGUGGCAGUCAUGGGUUAAGGGAGGGACUU-UCAAGAGUCCUUCGACUUU-UGCAGCUAACUAGGGAGUAGGGUA- .((((((..((((((((.-(((((.(((...))))))))(((.....))).))))))))..))).(((((((((-....)))))))))......-))).(((.(((....)))..))).- ( -41.00) >DroSim_CAF1 22544 116 + 1 AGCAUUUUCCCCAUGACA-GCCUGUCAUGUCAUGUAGGCGUUUAAGUGGCAGUCAUGGGUUAAGGGAGGGACUU-UCAAGAGUCCUUCGACUUU-UGCAGCUAACUAGGGAGUAGGGUA- .((((((..((((((((.-(((((.(((...))))))))(((.....))).))))))))..))).(((((((((-....)))))))))......-))).(((.(((....)))..))).- ( -41.00) >DroEre_CAF1 21563 118 + 1 AGCAUUUUCCCCACGACA-GCCUGUCAUGUCAUGUAGGCGUUUAAGUGGCAGUCAUGGGUUAAGGGAGGGACUUCUCAAGAGUCCUUCAACUUCUUGCAGCUAACUAGGCAGCAAGGUA- ....(((..((((.(((.-(((((.(((...))))))))(((.....))).))).))))..))).(((((((((.....)))))))))....((((((.(((.....))).))))))..- ( -41.50) >DroYak_CAF1 24117 120 + 1 AGCUUUUUCUUCCUGUCAUGCCUGUCAUGUCAUGUAGGCGUUUAAGUGGCAGUCAUGGGUUAAGGGAGGGACUUGUCACAAGUCCUGCGACUUUGCGCGGCUAACUAGGCAGUAGGGCAG .((.....((((((.(((((.(((((((...(((....)))....))))))).)))))....))))))(((((((...))))))).))(.((((((...(((.....))).))))))).. ( -41.20) >consensus AGCAUUUUCCCCAUGACA_GCCUGUCAUGUCAUGUAGGCGUUUAAGUGGCAGUCAUGGGUUAAGGGAGGGACUU_UCAAGAGUCCUUCGACUUU_UGCAGCUAACUAGGGAGUAGGGUA_ .((.(((..((((((((..(((((.(((...))))))))(((.....))).))))))))..))).(((((((((.....)))))))))........))(.((.(((....))).)).).. (-35.50 = -35.34 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:48 2006