Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,482,454 – 7,482,561 |
Length | 107 |
Max. P | 0.515232 |
Location | 7,482,454 – 7,482,561 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.24 |
Mean single sequence MFE | -20.94 |
Consensus MFE | -1.70 |
Energy contribution | -2.02 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.18 |
Mean z-score | -1.52 |
Structure conservation index | 0.08 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515232 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7482454 107 - 22224390 -UACAUAGUCAAUGUUAAAC-----CCACGUUACAAAAUGGUAAUUCAAAUU---ACUGUUUGUAUUACUGAUG-U-ACCAAAAUGGUCAAAAUUUUUCUACGGUGCAUC--UAUAUCUG -......((.(((((.....-----..))))))).....((((((.(((((.---...))))).))))))((((-(-((((((((.......))))).....))))))))--........ ( -19.70) >DroSec_CAF1 15559 108 - 1 -UACAUAGUCAAUGUAAAAC-----UUACGUUACAAAAUAGUUAUACAAACUGAGACUAUUA--UUUACUGAUG-U-ACUGAAAUGGUCAACAUUUUUCUACGGUGCAUC--UAUAUCUG -...((((((((((((....-----.))))))......(((((.....))))).))))))..--......((((-(-(((((((((.....))))).....)))))))))--........ ( -23.70) >DroSim_CAF1 17234 108 - 1 -UACAUAGUCAAUGUAAAAC-----UUACGUUACAAAAUAGUUAUUCAAACUGAGACUAUUA--UUUACUGAUG-U-ACUGAAAUGGUCAACAUUUUUCUACGGUGCAUC--UAUAUUUG -...((((((((((((....-----.))))))......(((((.....))))).))))))..--......((((-(-(((((((((.....))))).....)))))))))--........ ( -23.70) >DroEre_CAF1 16573 103 - 1 AUACAUAUCUAAUGUAAAAUGUAAUGUA-UCUACUAAAGAU----------UAUGGCGAUUA--UUUAGUGAUU-A-UCCGAAAUGGUGAGCAUUUUUCUACGGUGCAUC--UACAGCUG .(((((.....)))))...(((((((((-((((((((((((----------(.....)))).--)))))))...-.-...((((((.....)))))).....))))))).--)))).... ( -18.00) >DroYak_CAF1 18788 112 - 1 AUACAUAUGCAAUUUAAGGC-----CCA-GCUACUAAAGAUUGCUUUCAAUUAAGAUUAUUA--UUUACACAUUUAUUUGGAAAUGGUAAAUAUUUUUCCACGGUGCAUCUCUAUAGCUG ....................-----.((-((((.((.((((.((...(......((..(.((--(((((.(((((......)))))))))))).)..))....).)))))).)))))))) ( -19.60) >consensus _UACAUAGUCAAUGUAAAAC_____CUACGUUACAAAAUAGUUAUUCAAACUAAGACUAUUA__UUUACUGAUG_U_ACCGAAAUGGUCAACAUUUUUCUACGGUGCAUC__UAUAUCUG .(((((.....)))))................................................................((((((.....))))))....................... ( -1.70 = -2.02 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:35 2006