Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,452,408 – 7,452,505 |
Length | 97 |
Max. P | 0.640294 |
Location | 7,452,408 – 7,452,505 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 88.73 |
Mean single sequence MFE | -31.14 |
Consensus MFE | -20.72 |
Energy contribution | -21.16 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -2.46 |
Structure conservation index | 0.67 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640294 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7452408 97 - 22224390 CUGAGAAC------CCAAGUCGCAGUCGCAGAUGCGUU-GCUGCAGUCUGAGAGGAAAAUCGGUUGAAAAGCGG-------UUAGGAUUUGGGUGGAAAAUUGUUGGUAAA ......((------(((((((((((((((....)))..-)))))..(((....))).(((((.((....)))))-------))..)))))))))................. ( -30.20) >DroSec_CAF1 200659 97 - 1 CUGAGAAC------CCAAGUCGCAGUCGCAGAUGCGUU-GCUGCAGUCUGAGAGGAAAAUCGGUUGAAAAGCGG-------UAGGGAUUUGGGUGGAAAAUUGUUGGUAAA ......((------(((((((((((((((....)))..-)))))..(((....)))....(.(((....))).)-------....)))))))))................. ( -29.40) >DroSim_CAF1 195593 97 - 1 CUGAGAAC------CCAAGUCGCAGUCGCAGAUGCGUU-GCUGCAGUCUGAGAGGAAAAUCGGUUGAAAAGCGG-------UAGGGAUUUGGGUGGAAAAUUGUUGGUAAA ......((------(((((((((((((((....)))..-)))))..(((....)))....(.(((....))).)-------....)))))))))................. ( -29.40) >DroEre_CAF1 216032 105 - 1 CUGAGAAC-----CCAAAGUCGCAGUCGCAGAUGCGUU-GCUGCAGUCUGAGAGGAAAAUCGGUUGAAAAGCGUUUAGGUUUGGGGUUUUGGGUGGAAAAUAGUCGGUAAC ((.(((((-----((.((..(((((((((....)))..-)))))..(((....)))......(((....))).....)..)).))))))).)).................. ( -29.10) >DroYak_CAF1 246799 104 - 1 CUGAGACCGAGAAUCCAAGUCGCAGUCGCAGAUGCGUUGGCUGCAGUCUGAGAGGAAAAGCGCUUGAAAGGCGG-------UAGGGAUUUGGGUGGAAAAUUCUCGGUAAA .....((((((((((((((((((((((((....)))...)))))..(((....)))....((((.....)))).-------....))))))))).......)))))))... ( -37.61) >consensus CUGAGAAC______CCAAGUCGCAGUCGCAGAUGCGUU_GCUGCAGUCUGAGAGGAAAAUCGGUUGAAAAGCGG_______UAGGGAUUUGGGUGGAAAAUUGUUGGUAAA ..............(((((((((((((((....)))...)))))..(((....)))......(((....))).............)))))))................... (-20.72 = -21.16 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:38 2006