Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,409,801 – 7,409,894 |
Length | 93 |
Max. P | 0.702568 |
Location | 7,409,801 – 7,409,894 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 91.45 |
Mean single sequence MFE | -11.32 |
Consensus MFE | -9.52 |
Energy contribution | -9.30 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -1.84 |
Structure conservation index | 0.84 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.702568 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7409801 93 - 22224390 -GCGGACAACAAUAAAAA---CAAGCCAAAGGA-----AAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCU -..(((......((((..---.........((.-----.....))...(((((......))))).)))).........(((((((....)))))))..))). ( -13.00) >DroGri_CAF1 198645 93 - 1 CACAAUAAAU-AAAAAAA---CAAGCCAAAGAA-----AAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCU ..........-.......---........(((.-----..........(((((......)))))..............(((((((....))))))))))... ( -9.60) >DroWil_CAF1 168686 101 - 1 -ACGGACAAUAAAAAAAACAACAAGCCAAAGAAAAAAAAAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCU -..(((..........................................(((((......)))))..............(((((((....)))))))..))). ( -12.00) >DroYak_CAF1 197278 93 - 1 -ACGGACAACAAUAAAAA---CAAGCCAAAGGA-----AAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCU -..(((......((((..---.........((.-----.....))...(((((......))))).)))).........(((((((....)))))))..))). ( -13.00) >DroMoj_CAF1 246019 92 - 1 -AUAAAAAAC-AAAAACA---CAAGCCAAAGAA-----AAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCU -.........-.......---........(((.-----..........(((((......)))))..............(((((((....))))))))))... ( -9.60) >DroAna_CAF1 165529 93 - 1 -ACAGACAACAAUAAAAA---CAAGCCAAAGAA-----AAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCU -..((((...........---............-----..........(((((......)))))...............((((((....))))))))))... ( -10.70) >consensus _ACAGACAACAAAAAAAA___CAAGCCAAAGAA_____AAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCU .............................(((................(((((......)))))..............(((((((....))))))))))... ( -9.52 = -9.30 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:18 2006