Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,384,234 – 7,384,326 |
Length | 92 |
Max. P | 0.845327 |
Location | 7,384,234 – 7,384,326 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 77.39 |
Mean single sequence MFE | -22.90 |
Consensus MFE | -17.44 |
Energy contribution | -17.22 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.22 |
Mean z-score | -1.29 |
Structure conservation index | 0.76 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845327 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7384234 92 + 22224390 GCGGCGGAGCGUGCCAUCAAUAUGGCAAACGACGACAAACGCA--AACUUAGAAACGACUGAGUGAAUCGAC-GAUGGCAACUACUG-------CGGCGAAG ((.((((((..(((((((....((.....))........((..--.((((((......))))))....))..-))))))).)).)))-------).)).... ( -28.40) >DroVir_CAF1 177338 78 + 1 GCGCCGGAGCGUGCCAUCAAUAUGGCAAACGACGACAAACGCA--AACUUAGAAACGACUGAGUGACUC--------UCAAC--------------GCGACG (((.((..(..((((((....))))))..)..)).........--.((((((......)))))).....--------....)--------------)).... ( -20.00) >DroWil_CAF1 144373 90 + 1 GUGGUAGAGCGUGCCAUCAAUAUGGCAAAUGACGACAAACGCAAAAACUUAGAAACGACUGAGUGAGUUAAGCCA---CAGC--CAA-------CAAAUUCG (((((...(((((((((....)))))...((....)).))))....((((((......)))))).......))))---)...--...-------........ ( -22.60) >DroYak_CAF1 168978 99 + 1 GCGGCGGAGCGUGCCAUCAAUAUGGCAAACGACGACAAACGCA--AACUUAGAAACGACUGAGUGAAUCGAC-GAUGGCAACUACUACUGCGUACGGCGACG ((((..(((..(((((((....((.....))........((..--.((((((......))))))....))..-))))))).)).)..))))...((....)) ( -26.40) >DroMoj_CAF1 212369 80 + 1 GCGCCGGAGCGUGCCAUCAAUAUGGCAAACGACGACAAACGCA--AAUUUAGAAACGACUGAGUGACUCU------CUCAAC--------------GCGACG (((..((((.(((((((....))))).................--.((((((......)))))).)).))------))...)--------------)).... ( -17.90) >DroAna_CAF1 143529 77 + 1 GCGGCGGAGCGUGCCAUCAAUACGGCAAACGACGACAAACGCA--AACUUAGAAACGUCUGAGUGAAUCGAC-GA----------------------CGAUG (((.((..(..((((........))))..)..)).....))).--.(((((((....)))))))..((((..-..----------------------)))). ( -22.10) >consensus GCGGCGGAGCGUGCCAUCAAUAUGGCAAACGACGACAAACGCA__AACUUAGAAACGACUGAGUGAAUCGAC_GA___CAAC______________GCGACG (((.((..(..((((((....))))))..)..)).....)))....((((((......))))))...................................... (-17.44 = -17.22 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:14 2006